RetrogeneDB ID: | retro_ocun_770 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:110220008..110220380(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1orf123 | ||
Ensembl ID: | ENSOCUG00000029317 | ||
Aliases: | None | ||
Description: | chromosome 1 open reading frame 123 [Source:HGNC Symbol;Acc:26059] |
Percent Identity: | 66.94 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | EKWQYIRQMDTVALKGGRGSA----SMVQKCKLCARENSIEILSSTIKSYNAEDNEKFKTIVEFECRGLE |
E.WQ.......VA.K...G......SM.QKCKL.A.ENSI.ILSSTIKS.NAEDNEK..T.VE.EC.G.. | |
Retrocopy | EMWQLW*DFKEVAIKLADGQPDPDPSMAQKCKLRALENSIGILSSTIKSFNAEDNEKLQTKVESEC*GPK |
Parental | PVDFQPQAGFAAEGVESGTVFSDINLQEKDWTDYDEKAQESVGIYEVTHQFLKC |
PVD..PQ.GFAAE.VESG.V.SDINLQEK.WTD..E.AQESVGIYEVTHQF.KC | |
Retrocopy | PVD**PQVGFAAEDVESGIVVSDINLQEKNWTDS*ENAQESVGIYEVTHQFQKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .22 RPM |
SRP017611_liver | 0 .00 RPM | 17 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004526 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000011509 | 1 retrocopy | |
Homo sapiens | ENSG00000162384 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004027 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002439 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017988 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029317 | 1 retrocopy |
retro_ocun_770 ,
|
Otolemur garnettii | ENSOGAG00000013324 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009003 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001336 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000752 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012724 | 3 retrocopies |