Parental gene: | RGD1559786, ENSRNOG00000012724 |
| Aliases: | None |
| Description: | UPF0587 protein C1orf123 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q498R7] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 5:131337313..131345189(+) |
>ENSRNOG00000012724
ATGGGGAAAATCGCACTTCAGCTCAAAGCCACACTGGAGAACGTCACGAACCTTCGGCCAGTGGGCGAAGACTTCCGGTG
GTACCTCAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGAGAAGTGGCAATATATCCGGCTGATGGACAGTGTGGCGC
TGAAAGGAGGCCGAGGCAGTGCCTCCATGGTCCAGAAGTGCAAGCTGTGTGCACGGGAGAACTCTATTGAAATTCTGAGC
AGCACCATCAAGTCTTACAATGCAGAAGACAACGAGAAGTTCAAGACAATAGTAGAGTTTGAGTGCCGGGGCCTTGAACC
AGTTGACTTCCAGCCCCAGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGTCTTCAGTGACATCAATCTGCAAG
AAAAGGACTGGACAGACTATGATGAGAAGACTCAGGAGTCTGTGGGGATCTTTGAAGTCACCCATCAGTTTGTGAAGTGC
TGA
ATGGGGAAAATCGCACTTCAGCTCAAAGCCACACTGGAGAACGTCACGAACCTTCGGCCAGTGGGCGAAGACTTCCGGTG
GTACCTCAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGAGAAGTGGCAATATATCCGGCTGATGGACAGTGTGGCGC
TGAAAGGAGGCCGAGGCAGTGCCTCCATGGTCCAGAAGTGCAAGCTGTGTGCACGGGAGAACTCTATTGAAATTCTGAGC
AGCACCATCAAGTCTTACAATGCAGAAGACAACGAGAAGTTCAAGACAATAGTAGAGTTTGAGTGCCGGGGCCTTGAACC
AGTTGACTTCCAGCCCCAGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGTCTTCAGTGACATCAATCTGCAAG
AAAAGGACTGGACAGACTATGATGAGAAGACTCAGGAGTCTGTGGGGATCTTTGAAGTCACCCATCAGTTTGTGAAGTGC
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 9 .28 RPM |
| SRP017611_kidney | 17 .72 RPM |
| SRP017611_brain | 24 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004526 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000011509 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000162384 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004027 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006397 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002439 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000028608 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017988 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000029317 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013324 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000009003 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000001336 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000752 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1999 | 76.84 | 58.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2403 | 58.33 | 51.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2705 | 73.98 | 76.25 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000012724 retrocopies