RetrogeneDB ID: | retro_ocun_467 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:39875392..39875706(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSOCUG00000029448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 81.13 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VGDDMFHWQATIMGPNDSPYQGGVFF-LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWS |
V.DD.FHWQAT.MGPNDSPYQGGVFF.LTIHFPTDYPFKPPK.AFTTRIYHPNIN.NG.ICL.ILRS.WS | |
Retrocopy | VRDDIFHWQATMMGPNDSPYQGGVFF<LTIHFPTDYPFKPPKAAFTTRIYHPNINNNGRICLKILRS*WS |
Parental | PALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD |
PALTISKVLL.I.S.LCDPNPD..LVP.IA.I.... | |
Retrocopy | PALTISKVLLFIYSMLCDPNPDYLLVPQIA*IQDSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 45 .75 RPM |
SRP017611_kidney | 0 .41 RPM | 26 .66 RPM |
SRP017611_liver | 0 .00 RPM | 10 .33 RPM |