RetrogeneDB ID: | retro_ocun_887 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:21073926..21074197(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSOCUG00000029448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 82.8 % |
Parental protein coverage: | 61.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MALKRIHKELNDL-ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF |
M.LK...KEL.DL.A.DP.A.CSAGPVGD.MFHWQATIMGPNDSPYQGGVFFL.IHFPTD.PFKPPKVAF | |
Retrocopy | MVLKQVNKELSDL<AHDPSARCSAGPVGDAMFHWQATIMGPNDSPYQGGVFFLKIHFPTD*PFKPPKVAF |
Parental | T-TRIYHPNINSNGSICLDILRS |
T.TRIYHPNINSNG.ICL.ILR. | |
Retrocopy | T<TRIYHPNINSNGRICLNILRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 45 .75 RPM |
SRP017611_kidney | 0 .61 RPM | 26 .66 RPM |
SRP017611_liver | 0 .00 RPM | 10 .33 RPM |