RetrogeneDB ID: | retro_ocun_1660 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018747:1747701..1747959(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSOCUG00000029448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 52.81 % |
Parental protein coverage: | 60.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR |
LK....E...LARD..A...AGPVG.DM....AT..GP.DSP.QGGVF....H.P.D.PFKP.KV..T.R | |
Retrocopy | LKHSSEECPALARDLVAHHCAGPVGGDMLV-EATERGPSDSPHQGGVFLTIVHLPADDPFKPLKVTCTVR |
Parental | IYHPNINSNGSICLDILRS |
I.H.N.NS......D.LRS | |
Retrocopy | IHHANVNSDTR--ADVLRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 45 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .66 RPM |
SRP017611_liver | 0 .00 RPM | 10 .33 RPM |