Parental gene:

UBE2E1, ENSOCUG00000006026

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 1 [Source:HGNC Symbol;Acc:12477]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:14:10131347..10210251(+)


>ENSOCUG00000006026
ATGTCGGATGACGATTCGAGGGCCAGCACCAGCTCCTCCTCATCTTCGTCCTCCAACCAGCAAACCGAGAAAGAAACAAA
CACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAGGATTCAGA
AGGAACTGGCAGACATCACTTTAGACCCTCCACCCAACTGCAGCGCTGGCCCCAAAGGTGATAACATCTATGAGTGGAGA
TCCACCATTCTAGGGCCTCCAGGATCTGTGTACGAAGGTGGCGTCTTCTTTCTCGATATTACTTTTACACCAGAATATCC
CTTCAAGCCTCCCAAGGTTACATTTCGGACAAGAATCTATCACTGTAATATTAACAGTCAAGGAGTTATTTGCTTGGACA
TATTGAAAGATAATTGGAGTCCAGCACTAACTATTTCTAAAGTCCTCCTTTCCATCTGCTCACTTCTTACAGACTGTAAT
CCTGCCGACCCTCTGGTGGGCAGCATCGCCACCCAGTACATGACCAACAGAGCAGAGCACGACCGGATGGCCCGACAGTG
GACCAAGAGATACGCCACATAA

Library Parental gene expression (RPM)
SRP017611_brain 33 .61 RPM
SRP017611_kidney 17 .03 RPM
SRP017611_liver 2 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003515 ortholog_one2one 2 retrogenes
retro_amel_1117, retro_amel_483,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Cavia porcellus ENSCPOG00000002251 ortholog_one2many 2 retrogenes
retro_cpor_1036, retro_cpor_52,
Felis catus ENSFCAG00000024719 ortholog_one2one 1 retrogene
retro_fcat_623,
Macropus eugenii ENSMEUG00000014517 ortholog_one2one 1 retrogene
retro_meug_2089,
Mus musculus ENSMUSG00000021774 ortholog_one2one 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Oryctolagus cuniculus ENSOCUG00000002610 other_paralog 3 retrogenes
retro_ocun_826, retro_ocun_932, retro_ocun_937,
Oryctolagus cuniculus ENSOCUG00000008900 other_paralog 1 retrogene
retro_ocun_1058,
Oryctolagus cuniculus ENSOCUG00000029448 other_paralog 10 retrogenes
retro_ocun_1220, retro_ocun_1426, retro_ocun_1536, retro_ocun_1660, retro_ocun_1856, retro_ocun_1941, retro_ocun_261, retro_ocun_467, retro_ocun_887, retro_ocun_988,
Rattus norvegicus ENSRNOG00000008794 ortholog_one2one 3 retrogenes
retro_rnor_1632, retro_rnor_2291, retro_rnor_2343,
Sarcophilus harrisii ENSSHAG00000001416 ortholog_one2one 1 retrogene
retro_shar_712,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_134 74.01 91.71
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2. retro_ocun_243 78.65 99.48
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Download FASTA sequences of all ENSOCUG00000006026 retrocopies