RetrogeneDB ID: retro_ogar_2414

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873620.1:907103..907562(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF5A
• Ensembl ID: ENSOGAG00000014230
• Aliases: None
• Description: eukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:3300]

Sequence

>retro_ogar_2414
GTGGCAGATGATTTGGACTTGGAGACAGAAGATGCAGGGGCCTCAGCCACCTTCCCAAAGCAGTGCTCAGCATTACATGA
GAACGGCTCTGTGGTGCTCAATGGCTAGCTATGTAAGATTGTCGAGATGTCTACTTTGAAGACCGGCAAACATGGCCATG
CCAAGGTCCACCTGGTTGGTACTGACCCCTTTACTGGGAAGGAATATGAAGACATCTGCCTGTCAACTCACAATGTGGAC
AGCCCCAACACCAAAAGGAATGATTCCAGCTGACTGGCATCCAGGACGGGTACCAATCAGGGCTCCAGGATAGTGAAGAG
GTGGGAGAGGACCTTTGTCTGCTGAGGGAGACCTTGGCAAGGAGGCTGAGCAGAAGCATGACCGTGAGAAGAGAGCCTGA
CCACTGCGCTGCCCGCTGTGACAGAGGAGGCCACTGGTGCCATCAAGGCCATGGCAAAG

Alignment

ORF - retro_ogar_2414 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.16 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYE
          .ADDLD.ET.DAGASATFP.QCSAL..NG.VVL.G..CKIVEMST.KTGKHGHAKVHLVG.D.FTGK.YE
Retrocopy VADDLDLETEDAGASATFPKQCSALHENGSVVLNG*LCKIVEMSTLKTGKHGHAKVHLVGTDPFTGKEYE

Parental  DICPSTHNMDVPNIKRND-FQLIGIQDGYLSLLQDSGEVREDLRL-PEGDLGKEIEQKYDCG-EEILITV
          DIC.STHN.D.PN.KRND.FQL.GIQDGY.S.LQDS.EV.EDL.L..EGDLGKE.EQK.D...EE.L.T.
Retrocopy DICLSTHNVDSPNTKRND<FQLTGIQDGYQSGLQDSEEVGEDLCL<AEGDLGKEAEQKHDRE<EESLTTA

Parental  LSAMTEEAAVAIKAMAK
          L.A.TEEA..AIKAMAK
Retrocopy LPAVTEEATGAIKAMAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2414 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132507	3 retrocopies	retro_hsap_1788, retro_hsap_2004, retro_hsap_9,
Gorilla gorilla	ENSGGOG00000012032	2 retrocopies	retro_ggor_1448, retro_ggor_159,
Monodelphis domestica	ENSMODG00000006652	2 retrocopies	retro_mdom_1641, retro_mdom_190,
Otolemur garnettii	ENSOGAG00000014230	1 retrocopy	retro_ogar_2414 ,
Pan troglodytes	ENSPTRG00000008674	3 retrocopies	retro_ptro_1198, retro_ptro_442, retro_ptro_504,
Sus scrofa	ENSSSCG00000017939	1 retrocopy	retro_sscr_1204,
Tursiops truncatus	ENSTTRG00000009783	1 retrocopy	retro_ttru_1526,