RetrogeneDB ID: | retro_ogar_3189 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873738.1:100284..100884(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSOGAG00000015353 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] |
Percent Identity: | 90. % |
Parental protein coverage: | 56.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP |
.REKEQF.KLFIGGLSFETTEESLRNYYEQWGKLTDC.VMRDPASKRSR.F.F..FSSMAEVDAAMAARP | |
Retrocopy | EREKEQFCKLFIGGLSFETTEESLRNYYEQWGKLTDCMVMRDPASKRSRVFVFLIFSSMAEVDAAMAARP |
Parental | HSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKR |
HSIDGRVVEPK.AVAREESGKPG.HV.VKK.FVGGIKEDTEEHHLRDYFEEYGKIDTIEIIT.RQ.GKKR | |
Retrocopy | HSIDGRVVEPKHAVAREESGKPGDHVIVKKVFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITNRQPGKKR |
Parental | GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSR |
GF.FVT.D.H.PVDKIVLQKYHTINGHNAEVRK.LSRQE.QEVQSSR.GRGGNFGFGDSR | |
Retrocopy | GFDFVTLDAHAPVDKIVLQKYHTINGHNAEVRKSLSRQEIQEVQSSRNGRGGNFGFGDSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013832 | 15 retrocopies | |
Ciona intestinalis | ENSCING00000004062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007908 | 2 retrocopies | |
Ciona savignyi | ENSCSAVG00000000472 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018577 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001084 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007578 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000015353 | 3 retrocopies |
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189 ,
|
Otolemur garnettii | ENSOGAG00000025948 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000028132 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000029707 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000030251 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011698 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011175 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010417 | 1 retrocopy |