RetrogeneDB ID: | retro_ogar_2590 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873637.1:1261279..1262354(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSOGAG00000028132 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 72.36 % |
Parental protein coverage: | 93.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREQEHFEKWGTLTDCVVMRD |
EVKPPPGRPQPDSG..RRR.GEEGHDPKEPEQLRKLFIGGLSFETTDDSLRE..HFEKWGTL.DCVVMR. | |
Retrocopy | EVKPPPGRPQPDSGHCRRRQGEEGHDPKEPEQLRKLFIGGLSFETTDDSLRE--HFEKWGTLIDCVVMRS |
Parental | PQTKRSRG-FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE |
P..K...G.FGFVTYSCVEEVDAAMCA.PHKVDGRVVEPKRAVSREDS....AHLTVKKIFVGGIKEDTE | |
Retrocopy | P-NKTFQG>FGFVTYSCVEEVDAAMCA*PHKVDGRVVEPKRAVSREDS----AHLTVKKIFVGGIKEDTE |
Parental | EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ |
EYNLRDY.EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ | |
Retrocopy | EYNLRDYLEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ |
Parental | SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG---FGGDGG |
SAGSQRGRGGGSGNFMG.GGNFGGGG...GRGG..G.RG..GGG.GG..G..GG..G.Y.G.......GG | |
Retrocopy | SAGSQRGRGGGSGNFMGQGGNFGGGGNFGGRGGYGGSRGSHGGGDGGYNG-FGGDSGNYGGGLGYSSRGG |
Parental | -GFESPAQTRQTTTAATKGGGPGYGNQGGGYGGGG--GYDGYNEGGNFGG---GNYGGGGNYNDFGNYSG |
.G...P....Q.......GG..GY.N.GG..GGG...G...YN..GN..G....NYG.......FG..S. | |
Retrocopy | YGGGGPGYGNQGGGYGDGGGYDGY-NEGGNFGGGNYCGGGNYNDFGNYSGQ*QSNYGPMKG-GSFGGRSS |
Parental | QQQSNYGPMKGGSFGGRSS |
......G...GG..GG..S | |
Retrocopy | GSPYGGGYGSGGGSGGYGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |