RetrogeneDB ID: | retro_rnor_1824 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:130510963..130511511(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hnrnpa2b1 | ||
Ensembl ID: | ENSRNOG00000011175 | ||
Aliases: | Hnrnpa2b1, Hnrpa2, Hnrpa2b1, hnRNP | ||
Description: | heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001098083] |
Percent Identity: | 97.83 % |
Parental protein coverage: | 53.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR |
MEREKEQF.KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD.AMAAR | |
Retrocopy | MEREKEQFCKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR |
Parental | PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK |
PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK | |
Retrocopy | PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK |
Parental | -RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE |
.RGFGFVTFDDHDPVDKIVLQKYHT.NGHNAEVRKALSRQEMQE | |
Retrocopy | <RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSRQEMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .50 RPM | 236 .54 RPM |
SRP017611_kidney | 0 .49 RPM | 315 .97 RPM |
SRP017611_liver | 0 .40 RPM | 165 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013832 | 15 retrocopies | |
Ciona intestinalis | ENSCING00000004062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007908 | 2 retrocopies | |
Ciona savignyi | ENSCSAVG00000000472 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018577 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001084 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007578 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015353 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000011698 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001556 | 11 retrocopies | |
Rattus norvegicus | ENSRNOG00000002270 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011175 | 3 retrocopies |
retro_rnor_1824 , retro_rnor_2043, retro_rnor_2339,
|
Rattus norvegicus | ENSRNOG00000036839 | 17 retrocopies | |
Vicugna pacos | ENSVPAG00000010417 | 1 retrocopy |