Parental gene:

HNRNPA3, ENSOGAG00000028132

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873567.1:9193075..9198993(-)


>ENSOGAG00000028132
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
AAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGGGGCTTT
GGTTTTGTGACTTACTCTTGTGTGGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTTGT
GGAACCAAAGAGAGCTGTTTCAAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTTACAGTGAAGAAAATTTTTGTTGGTG
GTATTAAAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATG
GAAGACAGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACTGTTGATAAAATTGTTGT
TCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGAT
CACAAAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGGGGAGGAAACTTTGGAGGTGGTGGAGGTAATTTTGGC
CGTGGTGGAAACTTTGGTGGAAGAGGAGGATATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGG
TGGATACAATGGATTTGGAGGTGATGGTGGCGGGTTCGAATCCCCAGCCCAGACCCGCCAAACAACGACGGCTGCAACCA
AAGGTGGTGGACCAGGATATGGAAACCAAGGTGGCGGATATGGTGGTGGAGGAGGATATGATGGTTACAATGAAGGAGGA
AATTTTGGAGGTGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTA
TGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCATATGGTGGTGGTTATGGATCTGGTGGTGGAA
GTGGTGGATATGGTAGCAGAAGGTTCTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013497 ortholog_one2one 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Mus musculus ENSMUSG00000059005 possible_ortholog 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000002501 other_paralog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Otolemur garnettii ENSOGAG00000015353 other_paralog 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Otolemur garnettii ENSOGAG00000025948 within_species_paralog 3 retrogenes
retro_ogar_1685, retro_ogar_3010, retro_ogar_3175,
Otolemur garnettii ENSOGAG00000029707 within_species_paralog 3 retrogenes
retro_ogar_1721, retro_ogar_205, retro_ogar_2321,
Otolemur garnettii ENSOGAG00000030251 other_paralog 2 retrogenes
retro_ogar_3509, retro_ogar_385,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Pteropus vampyrus ENSPVAG00000010380 ortholog_one2one 2 retrogenes
retro_pvam_1077, retro_pvam_326,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Sus scrofa ENSSSCG00000015988 ortholog_one2one 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_600 80.52 69.90
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2. retro_ogar_814 63.25 71.47
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3. retro_ogar_1869 83.66 93.98
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4. retro_ogar_1924 74.66 94.50
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5. retro_ogar_2222 98.02 52.88
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6. retro_ogar_2590 72.36 93.98
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7. retro_ogar_3215 72.44 58.12
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Download FASTA sequences of all ENSOGAG00000028132 retrocopies