RetrogeneDB ID: | retro_etel_1368 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_255494:2494..3031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000013603 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSETEG00000018577 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] |
Percent Identity: | 55.25 % |
Parental protein coverage: | 50.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHS |
E..Q..KLFIGGL...T.E..LR...E..G.LTDCVV...P..KRSR.FGFVT.S...E.DAAMAA.PH. | |
Retrocopy | ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHA |
Parental | IDGRVVEPKRAVAR-EE-SGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD-RQSGKK |
.DG..VE.KRAV.R.EE.S..PGAH..VKKLFVGG.K.D..E..L...F...G.....EII.D..QSGKK | |
Retrocopy | VDGNTVELKRAVSR>EE>SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD>KQSGKK |
Parental | RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM |
RGFGFV.F..HD..DK....K.H.I.GH..EV.KA...... | |
Retrocopy | RGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005726 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013832 | 15 retrocopies | |
Ciona intestinalis | ENSCING00000004062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007908 | 2 retrocopies | |
Ciona savignyi | ENSCSAVG00000000472 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012928 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005482 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018577 | 1 retrocopy |
retro_etel_1368 ,
|
Felis catus | ENSFCAG00000027765 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001084 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007578 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004980 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026859 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015353 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000011698 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011175 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006202 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000000709 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010417 | 1 retrocopy |