RetrogeneDB ID: | retro_oruf_33 | ||
Retrocopylocation | Organism: | Brownbeard rice (Oryza rufipogon) | |
Coordinates: | 3:17988..19137(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ORUFI03G00040 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ORUFI02G02210 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.87 % |
Parental protein coverage: | 79.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RLRIFSGTANPSLSQEIASYLGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLI |
RLRIFSGTANP.L.QE.A.YLG.ELG...IKRFADGE.YVQLQESVRGCDVFLVQPTCPPANENLMELLI | |
Retrocopy | RLRIFSGTANPRLAQEVACYLGMELGRVKIKRFADGELYVQLQESVRGCDVFLVQPTCPPANENLMELLI |
Parental | MIDACRRASAKNITAVIPYFGYARADRKSQ-GRESIAAKLVANMITEAGANRVLVCDLHSSQAMGYFDIP |
MIDACRRASAK.ITAV.PYFGYARADRK...GRESIAAKLVAN.ITEAGA.RVL.CDLHS.Q..GYFDIP | |
Retrocopy | MIDACRRASAKTITAVVPYFGYARADRKMRGGRESIAAKLVANLITEAGAHRVLACDLHSGQSIGYFDIP |
Parental | VDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN---VMNLIGD |
VDHVYGQPVILDYLASKTIC.D..VVVSPDVGGVARAR.FAKKLSDAPLAIVDKRR.GHN...V..LIGD | |
Retrocopy | VDHVYGQPVILDYLASKTICPDEVVVVSPDVGGVARARTFAKKLSDAPLAIVDKRRQGHNQSEVVHLIGD |
Parental | VRGKVAVMMDDMIDTAGTIAKGAELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPLKED |
VRGKVAVM.DDMIDTAGT...GAELLH.EGAR.VYAC.THAV.SPPA..RLSSGLFQEVI.TNT.P.... | |
Retrocopy | VRGKVAVMVDDMIDTAGTVSQGAELLHREGARAVYACSTHAVLSPPAVDRLSSGLFQEVIVTNTVPVLHH |
Parental | KSFPQLTILSVANLLGETIWRVHDDCSVST |
..FPQLT.LSVANLLGETIWRVHDDCSVS. | |
Retrocopy | RTFPQLTVLSVANLLGETIWRVHDDCSVSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Leersia perrieri | LPERR02G02000 | 1 retrocopy | |
Oryza brachyantha | OB02G12100 | 1 retrocopy | |
Oryza barthii | OBART02G02200 | 1 retrocopy | |
Oryza glumaepatula | OGLUM02G02060 | 1 retrocopy | |
Oryza nivara | ONIVA02G02120 | 1 retrocopy | |
Oryza punctata | OPUNC02G01640 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G02210 | 1 retrocopy |
retro_oruf_33 ,
|
Oryza sativa japonica | OS02G0127700 | 1 retrocopy |