RetrogeneDB ID: | retro_pabe_1597 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:46684367..46684839(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSPPYG00000016529 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 68.07 % |
Parental protein coverage: | 84.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LKSTPRPKFSVCVL-GDQQHCDEAKAVD-IPHMDIEALKKLNKNKKLVKKLAKKYDAF-LASESLIKQIP |
LKST.....SV..L.G.QQHCD.AKAV..IP.MD.EAL.KL.KN....K.LAK.Y....LA.ES.IKQIP | |
Retrocopy | LKSTTHFHSSVRIL<GGQQHCDKAKAVE<IPRMDLEALEKLDKN----KRLAKRYGTI<LALESQIKQIP |
Parental | RILGPGLNKAGKFPSLLTHNENMVAKVDEV-KSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFL |
RILGPGLNKAGKFPSLLTHN.NM.AKVDEV...TIK.QMK..LCLA.A.G..KM..DELV.NIH..V.FL | |
Retrocopy | RILGPGLNKAGKFPSLLTHNGNMLAKVDEV>EPTIKLQMKRGLCLAMAIGPLKMAYDELVCNIHFTVSFL |
Parental | VSLLKKNWQNVRALYIKSTMGKPQRL |
VSLL.KNWQNV..L..KSTMG.PQ.L | |
Retrocopy | VSLL*KNWQNVHTLNRKSTMGQPQCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 74 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 76 .12 RPM |
SRP007412_heart | 0 .00 RPM | 94 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 196 .86 RPM |
SRP007412_liver | 0 .00 RPM | 146 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1935 |
Pan troglodytes | retro_ptro_1293 |
Gorilla gorilla | retro_ggor_1407 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000014090 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016529 | 10 retrocopies |
retro_pabe_1208, retro_pabe_1597 , retro_pabe_2614, retro_pabe_2759, retro_pabe_3302, retro_pabe_3315, retro_pabe_3377, retro_pabe_357, retro_pabe_451, retro_pabe_475,
|
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |