RetrogeneDB ID: | retro_pabe_3302 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:17795189..17795679(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSPPYG00000016529 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 85.37 % |
Parental protein coverage: | 85.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRIL |
LKSTP..KFS.C.LGDQQHCD.AKAV.IP...IE..KKLN.NKKLVKKLAKKYDAFLASESLIKQIPRIL | |
Retrocopy | LKSTPHSKFSLCSLGDQQHCDDAKAVGIPDVNIEMMKKLNENKKLVKKLAKKYDAFLASESLIKQIPRIL |
Parental | GPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGH-VKMTDDELVYNIHLAVNFLVSL |
GPGLNK.GKFPSLLTH.ENMVA..DE.KSTIKFQMKKVL.LAV.VGH.VKMTDDE.V.NIHLAVNFLVSL | |
Retrocopy | GPGLNKVGKFPSLLTHHENMVARGDEAKSTIKFQMKKVLYLAVTVGH>VKMTDDEFV*NIHLAVNFLVSL |
Parental | LKKNWQNVRALYIKSTMGKPQRLY |
LKKNWQNV.ALYIKST.GKPQRLY | |
Retrocopy | LKKNWQNVWALYIKSTVGKPQRLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 74 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 76 .12 RPM |
SRP007412_heart | 0 .06 RPM | 94 .83 RPM |
SRP007412_kidney | 0 .03 RPM | 196 .86 RPM |
SRP007412_liver | 0 .31 RPM | 146 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000014090 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016529 | 10 retrocopies |
retro_pabe_1208, retro_pabe_1597, retro_pabe_2614, retro_pabe_2759, retro_pabe_3302 , retro_pabe_3315, retro_pabe_3377, retro_pabe_357, retro_pabe_451, retro_pabe_475,
|
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |