RetrogeneDB ID: | retro_ptro_903 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:34759417..34759799(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSPTRG00000008248 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITA |
.GDKPIWEQIGSSFI.HYYQLFDNDR.QLGAIYIDASCLTWEGQQFQGKAAIVEKLSSL.FQKIQHSITA | |
Retrocopy | VGDKPIWEQIGSSFIPHYYQLFDNDRPQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLRFQKIQHSITA |
Parental | QDHQPTPDSCIISMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG |
QDHQ.TP.SCIISMVVGQLK.DED..IMGFHQMFLLKNIN..WVCTNDMFRLALHNFG | |
Retrocopy | QDHQLTPHSCIISMVVGQLKVDED>AIMGFHQMFLLKNINNTWVCTNDMFRLALHNFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 65 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .07 RPM |
SRP007412_heart | 0 .06 RPM | 18 .04 RPM |
SRP007412_kidney | 0 .13 RPM | 30 .55 RPM |
SRP007412_liver | 0 .03 RPM | 19 .21 RPM |
SRP007412_testis | 0 .11 RPM | 19 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1322 |
Gorilla gorilla | retro_ggor_1032 |
Pongo abelii | retro_pabe_1101 |
Macaca mulatta | retro_mmul_2169 |