RetrogeneDB ID: | retro_pvam_130 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1540:430499..430871(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSPVAG00000012492 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
MPPK.DKKK.DA..S.KKDKDPVNKS..KAK.KK.SKGKV.DKLNNLVLFDK.TYDKLCKEVP.Y.LITP | |
Retrocopy | MPPKNDKKKTDARNSTKKDKDPVNKSASKAKRKK*SKGKVQDKLNNLVLFDKVTYDKLCKEVPDYNLITP |
Parental | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
AVVSERLKI.GSLAR.ALQEL.SKGLIKLVSK.RAQV...RNTKGGDA.AAGEDA | |
Retrocopy | AVVSERLKI*GSLARVALQELFSKGLIKLVSK*RAQVT-PRNTKGGDALAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000012492 | 12 retrocopies |