RetrogeneDB ID: | retro_pvam_1448 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_89482:85..456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSPVAG00000012492 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 76.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATY-DKLCKEVPNYKLIT |
MPPKD.KKKKDA.KSAKK.KDPVNKSG.KAKKK.WSKGKVRDKLN.LVL..K........K.VP.YKLIT | |
Retrocopy | MPPKDGKKKKDAEKSAKKGKDPVNKSGSKAKKK-WSKGKVRDKLNDLVLSEKTHK<ERFYKKVPIYKLIT |
Parental | PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
.A..SERL.IRGSL.RAALQ.LLSK...KLVSKHR.QVIYTRNT.GGDAPAAGEDA | |
Retrocopy | LAIISERLQIRGSLVRAALQKLLSKEFFKLVSKHRPQVIYTRNTRGGDAPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000012492 | 12 retrocopies |