RetrogeneDB ID: | retro_rnor_2477 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:108397260..108397633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000008326 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hypk | ||
Ensembl ID: | ENSRNOG00000015703 | ||
Aliases: | Hypk, RGD1311457 | ||
Description: | Protein Hypk [Source:UniProtKB/TrEMBL;Acc:F1M8A5] |
Percent Identity: | 81.6 % |
Parental protein coverage: | 96.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EIEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEE-KEIQSSNLETAMSVIGDRRSRE |
EIEMATEG.V.L.LE.E.SGPE.PP.KPRKHDSG.ADLERVTD.AEE.KE.QS.NLE.AMS..GDR.SRE | |
Retrocopy | EIEMATEGEVKLKLESEISGPEQPPAKPRKHDSGVADLERVTD*AEE>KETQSLNLEMAMSITGDRQSRE |
Parental | QKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALTN |
QKAKQE.EKEL.K.TIKKEDLELIMTEMEISRAAAERSLREHM.NVVE.L..LTN | |
Retrocopy | QKAKQEWEKELVKITIKKEDLELIMTEMEISRAAAERSLREHMDNVVEGLLTLTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .05 RPM |
SRP017611_liver | 0 .00 RPM | 22 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002541 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007464 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000014809 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013059 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017744 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005454 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001161 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010201 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006424 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000038721 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015703 | 1 retrocopy |
retro_rnor_2477 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000006916 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003726 | 1 retrocopy |