RetrogeneDB ID: | retro_tsyr_2011 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_79078:337..959(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000010339 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO1 | ||
Ensembl ID: | ENSTSYG00000002509 | ||
Aliases: | None | ||
Description: | enolase 1, (alpha) [Source:HGNC Symbol;Acc:3350] |
Percent Identity: | 79.33 % |
Parental protein coverage: | 93.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSVLKIHAREIFDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHIN |
MSVLK..AREIFD..GN.TVEVDLYT.KG.FRA.VPSGASTGI.EALEL...DKT.YMGK.VSKAVEHIN | |
Retrocopy | MSVLKVQAREIFDFCGNSTVEVDLYTTKGFFRATVPSGASTGINEALELWHSDKTCYMGKSVSKAVEHIN |
Parental | KTIAPALVSKKLNVVEQEKIDKLMIEM-DGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAG |
KTI..ALVSKKLNV..QEKI.KL.IEM.DG.E.KSKFGANAILGVSLAVCKAGAVEKG.PLY.HI..LAG | |
Retrocopy | KTIEHALVSKKLNVMKQEKINKLIIEM>DGMEHKSKFGANAILGVSLAVCKAGAVEKGTPLYHHITNLAG |
Parental | NSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFKEAMRIGAEVYHNLKNVIKEKYGKDATNV |
NSEVILPV..FNVINGGSHAG.KLAMQEFMILP.G.A.F.E.MRIG.EV..NLK.V.KEK...DATNV | |
Retrocopy | NSEVILPVLTFNVINGGSHAGSKLAMQEFMILPIGEANFREVMRIGTEV*YNLKKVVKEK*WNDATNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |
retro_tsyr_2011 ,
|
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |