RetrogeneDB ID: | retro_tsyr_378 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_106191:5834..6427(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AURKA | ||
Ensembl ID: | ENSTSYG00000009221 | ||
Aliases: | None | ||
Description: | aurora kinase A [Source:HGNC Symbol;Acc:11393] |
Percent Identity: | 78.82 % |
Parental protein coverage: | 50.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VYLILEY-APLGTVYRELQKLSKFDQ-RTATYITELANALSYCHSKRVIHRDI-KPENLLLGSAG-ELKI |
VY.I.......GTVYRE..K..K....RTA.YITE.A..LSYCHSKRVIHR.I.KPENL.L.SA..ELKI | |
Retrocopy | VYIIVSILSHFGTVYREFSKTFKI*LWRTAAYITEMAKSLSYCHSKRVIHRGI<KPENLFLESAE<ELKI |
Parental | ADFGW-SVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGNPPFEASTNQETYRRI |
ADFG..SVHAPSSRRTTLCGTLDYLPPEM.E...HDEKVDLW.L.VLCYEFLVGNPP.EAS.N.ETYRRI | |
Retrocopy | ADFGC<SVHAPSSRRTTLCGTLDYLPPEMYECWTHDEKVDLWRLDVLCYEFLVGNPPSEASINPETYRRI |
Parental | SRIEFTFPDFVTEGAR-DLISRLLKHTPSQRLTLREVLEHPWITANSSKPSNCQNKESTSKQS |
SRIEFTFPDFVTEGAR.DLI.RLLKHTPSQRLTLR.V.EHPWITANSSKPSNCQNKES.S.QS | |
Retrocopy | SRIEFTFPDFVTEGAR<DLILRLLKHTPSQRLTLRAVPEHPWITANSSKPSNCQNKESASEQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029331 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005976 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000006633 | 1 retrocopy | |
Felis catus | ENSFCAG00000024493 | 1 retrocopy | |
Homo sapiens | ENSG00000087586 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007197 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007925 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000070 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027496 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007029 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004441 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011148 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013646 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004479 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007493 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011958 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013284 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009221 | 1 retrocopy |
retro_tsyr_378 ,
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