RetrogeneDB ID: | retro_sscr_936 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:54099635..54100679(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000001776 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AURKA | ||
Ensembl ID: | ENSSSCG00000007493 | ||
Aliases: | AURKA, ARK-1, STK6 | ||
Description: | Sus scrofa aurora kinase A (AURKA), mRNA. [Source:RefSeq mRNA;Acc:NM_001025225] |
Percent Identity: | 89.77 % |
Parental protein coverage: | 87.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKCKENCISGLKTTVPPGDGPKRVPVTQHFPAQHLPSANSGQAQRVLCPSNSSQRLPSHTQKLVSSHKP |
MDKCKENCISGLKTT.PPGD.PKRVP.TQHFPAQ..PSANSGQAQR.LCPSNSSQRLP.H.QKLVSSHKP | |
Retrocopy | MDKCKENCISGLKTTIPPGDDPKRVPGTQHFPAQNPPSANSGQAQRILCPSNSSQRLPLHAQKLVSSHKP |
Parental | VQNLKQKQSQATSGPRPVSRPLSNTQQSEQPQPAAPGNNPEKEAASKQKNEESKKRQWALEDFEIGRPLG |
.QNLKQKQ.QATSGPRPVSRPLSNTQQ.EQPQPAAPGNNPEKE.AS.QKNEE....QWALEDFE.G.P.G | |
Retrocopy | AQNLKQKQLQATSGPRPVSRPLSNTQQGEQPQPAAPGNNPEKEVASRQKNEEXXXXQWALEDFEVGCPPG |
Parental | KGKFGNVYLAREKQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL |
KGKFGNVYLAREKQSKFILALK.LFK.QLEK.GVEH.LRREVEIQSHLRHPNILRLYGYFHDATRVYLIL | |
Retrocopy | KGKFGNVYLAREKQSKFILALKILFKAQLEKVGVEHHLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL |
Parental | EYAPLGAVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH |
EY.PLGAVYRELQKLSKFDEQRTA.YITELANALSYCHSKR....DIKPENLLLGSAGELKIA.FGWSVH | |
Retrocopy | EYVPLGAVYRELQKLSKFDEQRTAAYITELANALSYCHSKR----DIKPENLLLGSAGELKIANFGWSVH |
Parental | APSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD |
APSSRRTTLC.TLDYLPPEMI.G.MHDEKVDLWSLG.LCYEFLVGKPPFEANTYQETYKRISRV.FTFPD | |
Retrocopy | APSSRRTTLCSTLDYLPPEMIKGQMHDEKVDLWSLGALCYEFLVGKPPFEANTYQETYKRISRVGFTFPD |
Parental | FV |
FV | |
Retrocopy | FV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .45 RPM |
SRP014902_testis | 0 .00 RPM | 7 .36 RPM |
SRP018288_heart | 0 .00 RPM | 2 .80 RPM |
SRP018288_kidney | 0 .00 RPM | 2 .66 RPM |
SRP018288_liver | 0 .00 RPM | 2 .56 RPM |
SRP018288_lung | 0 .00 RPM | 12 .12 RPM |
SRP018856_adipose | 0 .00 RPM | 2 .16 RPM |
SRP035408_brain | 0 .00 RPM | 4 .19 RPM |
SRP035408_liver | 0 .00 RPM | 12 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029331 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005976 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000006633 | 1 retrocopy | |
Felis catus | ENSFCAG00000024493 | 1 retrocopy | |
Homo sapiens | ENSG00000087586 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007197 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007925 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000070 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027496 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007029 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004441 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011148 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013646 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004479 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007493 | 1 retrocopy |
retro_sscr_936 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000011958 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013284 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009221 | 1 retrocopy |