RetrogeneDB ID:

retro_ogar_980

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873532.1:29550946..29551602(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000031951
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000004441
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_980
GTGGAAATCCGGTCCCATCTTCGGCATCCTAATATTCCCAGACTGTATGGTTATTTCCATGATGCCACCAGAGTTTACTT
AATTCTAGAATATGTGCCACTTGGAACAGTCTATAGAGAGCTGCAGAAACTTGCAAAGTTTGATGAGCAGAGAACTGCTA
CTTATATAACAGAACTGGCAAATGTCCTGTCTTACTGCCATTCAAAGAGAGTTATTCATAGAGATATTAAGCCAGAGAAC
CTGCTGCTAGGATCATCTGGAGAGTTTAAGATTGCAGATTTTGGCTGGTTGGTTCATGCTCCATCCTCCAGGAGAACTAC
TCTCTGTGGTACCCTGGACTACCTACCCCCTGAGATGATTGAAGGTCGGATGCATGATGAGAAGATAGACCTCTGGAGCC
TGGGAGTTCTTGCTATGAATTTTTAGCTGGGAAACCTCATTTTGAGGCAAACACATACCAACAGATCTACAAAAGAATAT
CACGGATTGAATTCACATTTCCTGAGTTTGTAACAGAAGGAGCCAGAGACCTTATTTCAAGACTGTTGAAGCATAATCCA
AGCCAGAGGCTGACTCTCAGAGAAGTACTTGAACACTCCTGGATCAAAGCAAATTCATCAAAACTATCAAATAGCCAAAA
CAAACAATCAAATAGC

ORF - retro_ogar_980 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.27 %
Parental protein coverage: 53.94 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLAKFDEQRTATYITELANALSYCHSKR
VEI.SHLRHPNI.RLYGYFHDATRVYLILEY.PLGTVYRELQKLAKFDEQRTATYITELAN.LSYCHSKR
RetrocopyVEIRSHLRHPNIPRLYGYFHDATRVYLILEYVPLGTVYRELQKLAKFDEQRTATYITELANVLSYCHSKR
ParentalVIHRDIKPENLLLGSSGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL-CY
VIHRDIKPENLLLGSSGE.KIADFGW.VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK.DLWSLGVL.CY
RetrocopyVIHRDIKPENLLLGSSGEFKIADFGWLVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKIDLWSLGVL<CY
ParentalEFLVGKPPFEANTYQETYRRISRIEFTFPEFVTEGARDLISRLLKHNPSQRLTLREVLEHPWIKANSSKP
EFL.GKP.FEANTYQ..Y.RISRIEFTFPEFVTEGARDLISRLLKHNPSQRLTLREVLEH.WIKANSSK.
RetrocopyEFLAGKPHFEANTYQQIYKRISRIEFTFPEFVTEGARDLISRLLKHNPSQRLTLREVLEHSWIKANSSKL
ParentalSSSQNKESNS
S.SQNK.SNS
RetrocopySNSQNKQSNS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_980 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000293313 retrocopies
Choloepus hoffmanni ENSCHOG000000059768 retrocopies
Cavia porcellus ENSCPOG000000066331 retrocopy
Felis catus ENSFCAG000000244931 retrocopy
Homo sapiens ENSG000000875861 retrocopy
Gorilla gorilla ENSGGOG000000071971 retrocopy
Myotis lucifugus ENSMLUG000000079251 retrocopy
Macaca mulatta ENSMMUG000000000701 retrocopy
Mus musculus ENSMUSG000000274961 retrocopy
Nomascus leucogenys ENSNLEG000000070291 retrocopy
Otolemur garnettii ENSOGAG000000009996 retrocopies
Otolemur garnettii ENSOGAG00000004441 3 retrocopies
retro_ogar_2805, retro_ogar_3440, retro_ogar_980 ,
Pongo abelii ENSPPYG000000111481 retrocopy
Pan troglodytes ENSPTRG000000136461 retrocopy
Rattus norvegicus ENSRNOG000000044792 retrocopies
Sus scrofa ENSSSCG000000074931 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000119582 retrocopies
Tupaia belangeri ENSTBEG000000132842 retrocopies
Tarsius syrichta ENSTSYG000000092211 retrocopy



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