RetrogeneDB ID: | retro_tsyr_395 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_10925:16951..17796(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPD1 | ||
Ensembl ID: | ENSTSYG00000000513 | ||
Aliases: | None | ||
Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
Percent Identity: | 71.33 % |
Parental protein coverage: | 66.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVD-LLADAVAVTMGPKGRTVIIEQSWG |
.L.LP..L.QMR.VS.A............VKF.AD.R.LML..VD.LLA.AVAVTMGP.GRTVI.EQSWG | |
Retrocopy | IL*LPRILCQMRLVSQAXXXXXXXXXXXXVKFSADTRDLMLPSVD<LLANAVAVTMGPEGRTVITEQSWG |
Parental | SPKVTKDGVTVAKSIDLKDKYKNIG-AKLVQDVANNTNEEAGDGTTTATVLA-RSIAKEGFEKISKGANP |
SPKV.KD.V..AKS..LKDKYKNIG...LVQDVANNT..EA....TT........I.KEGFEKISK..NP | |
Retrocopy | SPKVAKDSVAIAKSNVLKDKYKNIG<SQLVQDVANNTYREA-EYVTTTATVL>HTIGKEGFEKISKYTNP |
Parental | VEIRRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATISANGDKEIGSIISDAMKKVGRKGVITVKDGKTL |
VEIRRGVMLAVD.VI.E.KKQSKPVTTPEEI.QVATISANGDKEIG.IISD.MKKVGRKGVITVKD.KTL | |
Retrocopy | VEIRRGVMLAVDIVIAEFKKQSKPVTTPEEITQVATISANGDKEIGCIISDTMKKVGRKGVITVKDRKTL |
Parental | NDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAED |
NDEL..I.GMKFD.GYISPYFIN.SKGQKCEFQ..YV.LSEKK.S.VQ..VPALEIANAH....VIIAE. | |
Retrocopy | NDEL*TIKGMKFDQGYISPYFINISKGQKCEFQNVYVPLSEKKFSIVQFFVPALEIANAHCMYFVIIAEH |
Parental | VDGEAL |
V..E.. | |
Retrocopy | VSRETV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |