RetrogeneDB ID: | retro_ttru_1337 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_110858:374515..375098(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOOL | ||
Ensembl ID: | ENSTTRG00000000429 | ||
Aliases: | None | ||
Description: | apolipoprotein O-like [Source:HGNC Symbol;Acc:24009] |
Percent Identity: | 85.13 % |
Parental protein coverage: | 72.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKLTTMPAALICASISVHAAKEEESRKHLVKPEQLPIYTAPPLQSKYVDEQPGHLQMGFASIRTTTGRY |
MGK.TTMPA.LICAS..V..AKEEES...LVKP.QLPIYTAPPLQSKYV.EQPG.LQMGFASIRTTTG.Y | |
Retrocopy | MGKETTMPAGLICASVRVRVAKEEESKEQLVKPKQLPIYTAPPLQSKYVEEQPGDLQMGFASIRTTTGHY |
Parental | IGWCKGVYVFMKYGIMDTVQFGKDAYVYLKNPPRDFLPKIGVITVSGLAGFISARKGSRFKRIAYPLGLA |
IGWCK.VYVF.K.GIMDT.QFGKDAYVYLKNPPRDFLPKIGVITVSGLA.FISARKGSRFKRIAYPLGLA | |
Retrocopy | IGWCKDVYVFVKNGIMDTAQFGKDAYVYLKNPPRDFLPKIGVITVSGLAAFISARKGSRFKRIAYPLGLA |
Parental | TLGATVCYPVQSVIIAKVS-GKRHMLQASRFMKRLNHCGQKTTKKSHFLNLKKKL |
TLGATV.YPVQSV.IAKV..GKRH.L.AS.FMK..NHCGQKTTK.SHFLN.KKKL | |
Retrocopy | TLGATVLYPVQSVMIAKVT>GKRHVL*ASKFMKQFNHCGQKTTKRSHFLNQKKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000829 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017383 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008249 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011045 | 1 retrocopy | |
Equus caballus | ENSECAG00000009229 | 1 retrocopy | |
Homo sapiens | ENSG00000155008 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016329 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008844 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015844 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011384 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004335 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001899 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002634 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020516 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022067 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012459 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010147 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000000429 | 1 retrocopy |
retro_ttru_1337 ,
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