Parental gene:

APOOL, ENSSSCG00000012459

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:X:78031561..78104740(+)


>ENSSSCG00000012459
ATGGCGGCCTTTAGGATGAGAAAGCTGACAACCATGCCAGTAGGTCTAATATGTGCATCTGTAAGTGTGCATGTGGCCAA
AGAAGAGGAATCCAGAAAGCAGCTAGTGAAACCAGAGCAGCTCCCTATATATACTGCACCACCTCTTCAGTCTAAATATG
TTGAAGAACAGCCTGGTCGTTTACAAGTGGGCTTTGCATCCATTCGCACTACAACTGGTCGTTATCTTGGCTGGTGCAAG
AGTGCTTATGTCTTCATGAAAAATGGGATAAAGGATGCAGTACAATTTGGAAAAGATGCGTATGTCTATTTGAAGAATCC
ACCTCGAGACTTTCTGCCAAAAATTGGAGTAATTACAGTTTCAGGATTGGCAGGCTTTGTTTCAGCGAGAAAAGGTTCTA
GGTTTAAGAAAATTGCTTATCCACTGGGACTGGCCACTATAGGAGCAACTGTTTGCTACCCTGTTCAATCAGTAATAATT
GCAAAGGTAACTGGGAAAAAGGCATATACTACAAGCCAGGAAATTTATGAAGCAGTTAAATCATTGTGGACAAATAACAG
CAAAAAAGAGTCACTTCCTGAACCTAAAGAAAAAACTAAGCTGGGAAACTCTGCCAAAATAGCAATACCTGCAAAAACAG
CTCAGAACCTGAAACAGTCAGTGCCTTTGCCAACAGAACTCAGCTCTGAAACAAAGACCAAATCAGAATCCACCTCAGGT
GCTACACAGTTTTTGCTTGACCCCAAGCTCATAGATCATGGGCAGTCCCATCCAGAAGATGCAGATATGTACAGCACGAG
AAGCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .72 RPM
SRP014902_testis 4 .81 RPM
SRP018856_adipose 6 .55 RPM
SRP018288_kidney 21 .97 RPM
SRP018288_lung 4 .58 RPM
SRP018288_liver 12 .15 RPM
SRP018288_heart 28 .11 RPM
SRP035408_liver 22 .66 RPM
SRP035408_brain 4 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000829 ortholog_one2many 1 retrogene
retro_amel_1035,
Canis familiaris ENSCAFG00000017383 ortholog_one2one 1 retrogene
retro_cfam_1490,
Callithrix jacchus ENSCJAG00000008249 ortholog_one2many 2 retrogenes
retro_cjac_1783, retro_cjac_2464,
Dipodomys ordii ENSDORG00000011045 ortholog_one2many 1 retrogene
retro_dord_373,
Equus caballus ENSECAG00000009229 ortholog_one2many 1 retrogene
retro_ecab_577,
Homo sapiens ENSG00000155008 ortholog_one2many 1 retrogene
retro_hsap_3253,
Gorilla gorilla ENSGGOG00000016329 ortholog_one2many 1 retrogene
retro_ggor_2213,
Loxodonta africana ENSLAFG00000008844 ortholog_one2many 1 retrogene
retro_lafr_1035,
Microcebus murinus ENSMICG00000015844 ortholog_one2many 1 retrogene
retro_mmur_1511,
Myotis lucifugus ENSMLUG00000011384 ortholog_one2many 1 retrogene
retro_mluc_1364,
Macaca mulatta ENSMMUG00000004335 ortholog_one2many 1 retrogene
retro_mmul_2045,
Mustela putorius furo ENSMPUG00000001899 possible_ortholog 3 retrogenes
retro_mputfur_606, retro_mputfur_734, retro_mputfur_874,
Nomascus leucogenys ENSNLEG00000002634 ortholog_one2many 1 retrogene
retro_nleu_1702,
Pongo abelii ENSPPYG00000020516 ortholog_one2many 1 retrogene
retro_pabe_2697,
Pan troglodytes ENSPTRG00000022067 ortholog_one2many 1 retrogene
retro_ptro_2200,
Sus scrofa ENSSSCG00000012174 within_species_paralog 1 retrogene
retro_sscr_774,
Tupaia belangeri ENSTBEG00000010147 possible_ortholog 5 retrogenes
retro_tbel_2037, retro_tbel_2609, retro_tbel_2840, retro_tbel_3361, retro_tbel_3737,
Tursiops truncatus ENSTTRG00000000429 ortholog_one2many 1 retrogene
retro_ttru_1337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_610 62.41 51.87
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Download FASTA sequences of all ENSSSCG00000012459 retrocopies