RetrogeneDB ID: retro_mputfur_734

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896942.1:11342027..11342628(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Apool
• Ensembl ID: ENSMPUG00000001899
• Aliases: None
• Description: apolipoprotein O-like [Source:MGI Symbol;Acc:MGI:1915367]

Sequence

>retro_mputfur_734
CTTCCCATATATACTGCACCACCTCTGCAGTCTAAATATGTTGAAGAGTAGCCTGGTCATTTAGAAATGGGCTTTGCATC
CATCCTCAGTACAACTGGTCATTAAATTGGCTGGTGCAAGGGTGTTTATGTGTTTGTGAACAATGGGATAATGGATACAG
TACAATTTGGAAAAGATGCATATGTCTACTGAAGAATCCACCTCAAGATTTTCTTCCAAAACTTGGAGTGATTACAGTTT
CAGGATTGGCAGGCTTGGTTTCAGCAAGAAAAGGTTCTAGGTTTAAAAAAAATTGCATATCCACTGGGACTGGCCACCTT
CGGAGCAACTGTTTGCTACCCAGTTCAGTCAGTAATAATTGCAAAGGTAACTGGGAAAAAGTCATATACTATAATCCAGC
AAATTTATGAAGCAGTTAAATCATTGTGGACGAGAAAGCAACAAAGAAGAATCACTTCCTAAACCTAAAGGAAAATCGAA
GCTAGGAAATTCTGCTGCACTAGAAATACCTGCAAAAACAACTGACAGCCTGAAATATTCAGTGTCCTTGCCAGCAGAAC
TCAGCTCTGAAACAAAGACAAAATCAGAATCCACCTCAGGT

Alignment

ORF - retro_mputfur_734 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.7 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LPIYTAPPLQSKYVEEQPGHLQRGFASIRSTTGHYIGWCKGVYVFMKNGIMDTVQFGKDAYIY-LKNPPQ
          LPIYTAPPLQSKYVEE.PGHL..GFASI.STTGH.IGWCKGVYVF..NGIMDTVQFGKDAY.Y.LKNPPQ
Retrocopy LPIYTAPPLQSKYVEE*PGHLEMGFASILSTTGH*IGWCKGVYVFVNNGIMDTVQFGKDAYVY<LKNPPQ

Parental  DFLPKLGVITVSALAGLVSARKXSRF-KKIAYPLGLATLGATVCYPVQSVIIAKVTGEKAYTVSQQIYGA
          DFLPKLGVITVS.LAGLVSARK.SRF....AYPLGLAT.GATVCYPVQSVIIAKVTG.K.YT..QQIY.A
Retrocopy DFLPKLGVITVSGLAGLVSARKGSRF>XXXAYPLGLATFGATVCYPVQSVIIAKVTGKKSYTIIQQIYEA

Parental  VKSLRTK-SNKEESLPKPKEKSKLGNSATLEIPEKTTDSLKYSVSLPAELSSETKTKSESTSG
          VKSL.T..SNKEESLPKPK.KSKLGNSA.LEIP.KTTDSLKYSVSLPAELSSETKTKSESTSG
Retrocopy VKSLWTR>SNKEESLPKPKGKSKLGNSAALEIPAKTTDSLKYSVSLPAELSSETKTKSESTSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_734 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_734 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 19 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000000829	1 retrocopy	retro_amel_1035,
Canis familiaris	ENSCAFG00000017383	1 retrocopy	retro_cfam_1490,
Callithrix jacchus	ENSCJAG00000008249	2 retrocopies	retro_cjac_1783, retro_cjac_2464,
Dipodomys ordii	ENSDORG00000011045	1 retrocopy	retro_dord_373,
Equus caballus	ENSECAG00000009229	1 retrocopy	retro_ecab_577,
Homo sapiens	ENSG00000155008	1 retrocopy	retro_hsap_3253,
Gorilla gorilla	ENSGGOG00000016329	1 retrocopy	retro_ggor_2213,
Loxodonta africana	ENSLAFG00000008844	1 retrocopy	retro_lafr_1035,
Microcebus murinus	ENSMICG00000015844	1 retrocopy	retro_mmur_1511,
Myotis lucifugus	ENSMLUG00000011384	1 retrocopy	retro_mluc_1364,
Macaca mulatta	ENSMMUG00000004335	1 retrocopy	retro_mmul_2045,
Mustela putorius furo	ENSMPUG00000000109	1 retrocopy	retro_mputfur_109,
Mustela putorius furo	ENSMPUG00000001899	3 retrocopies	retro_mputfur_606, retro_mputfur_734 , retro_mputfur_874,
Nomascus leucogenys	ENSNLEG00000002634	1 retrocopy	retro_nleu_1702,
Pongo abelii	ENSPPYG00000020516	1 retrocopy	retro_pabe_2697,
Pan troglodytes	ENSPTRG00000022067	1 retrocopy	retro_ptro_2200,
Sus scrofa	ENSSSCG00000012459	1 retrocopy	retro_sscr_610,
Tupaia belangeri	ENSTBEG00000010147	5 retrocopies	retro_tbel_2037, retro_tbel_2609, retro_tbel_2840, retro_tbel_3361, retro_tbel_3737,
Tursiops truncatus	ENSTTRG00000000429	1 retrocopy	retro_ttru_1337,