Parental gene:

CIP29, ENSBTAG00000020662

Aliases:SARNP, CIP29
Description:SAP domain-containing ribonucleoprotein [Source:RefSeq peptide;Acc:NP_001036119]
Organism:Cow (Bos taurus)
Coordinates:5:57774485..57823736(+)


>ENSBTAG00000020662
ATGGCGACTGAGACGGTGGAGCTTCATAAGCTGAAGCTTGCTGAACTAAAGCAGGAGTGTCTTGCTCGTGGTTTGGAGAC
CAAGGGAATAAAACAAGATCTCATCAACAGGCTCCAGGCATATCTTGAAGAGCATGCTGAAGAGGAGGCAAATGAAGAAG
ATGTACTGGGAGATGAAACAGAGGAAGAAGAACCAAAGCCCTTAGAACTGCCTGTCAAAGAGGAAGAACCTCCTGAAAAA
ACTGTTGATGTGGCAGCAGAGAAAAAAGTGGTAAAAATTACATCTGAAATACCACAGACTGAGAGGATGCAGAAGAGAGC
TGAACGATTCAATGTACCTGTCAGTTTGGAGAGTAAGAAAGCTGCCCGGGCAGCTAGATTTGGGATTTCTCCAGTTCCAT
CAAAAGGCCTGTCGTCTGACACCAAGCCTATGGTTAACCTGGATAAGCTAAAAGAAAGAGCTCAAAGGTTTGGTTTGAAT
GTCTCTTCAATCTCCAGAAAGTCGGAGGATGACGAAAAGCTGAAAAAGAGGAAGGAGCGATTTGGGATTGTCACAAGTTC
AGCTGGAACAGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGAATTGCCTGA

Library Parental gene expression (RPM)
ERP005899_liver 17 .23 RPM
ERP005899_muscle 23 .17 RPM
SRP017611_brain 38 .19 RPM
SRP017611_kidney 31 .12 RPM
SRP017611_liver 10 .57 RPM
SRP030211_testis 50 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011769 ortholog_one2many 2 retrogenes
retro_amel_1602, retro_amel_347,
Choloepus hoffmanni ENSCHOG00000005081 ortholog_one2many 5 retrogenes
retro_chof_1001, retro_chof_1749, retro_chof_410, retro_chof_705, retro_chof_93,
Callithrix jacchus ENSCJAG00000007853 ortholog_one2many 8 retrogenes
retro_cjac_1070, retro_cjac_1487, retro_cjac_1801, retro_cjac_2439, retro_cjac_2560, retro_cjac_389, retro_cjac_4139, retro_cjac_731,
Cavia porcellus ENSCPOG00000011755 ortholog_many2many 1 retrogene
retro_cpor_1313,
Dipodomys ordii ENSDORG00000001065 ortholog_one2many 1 retrogene
retro_dord_80,
Erinaceus europaeus ENSEEUG00000015176 ortholog_one2many 1 retrogene
retro_eeur_549,
Homo sapiens ENSG00000205323 ortholog_one2many 1 retrogene
retro_hsap_3882,
Gorilla gorilla ENSGGOG00000013217 ortholog_one2many 2 retrogenes
retro_ggor_2613, retro_ggor_2753,
Loxodonta africana ENSLAFG00000015053 ortholog_one2many 1 retrogene
retro_lafr_1024,
Microcebus murinus ENSMICG00000010902 ortholog_one2many 1 retrogene
retro_mmur_358,
Myotis lucifugus ENSMLUG00000003565 ortholog_one2many 2 retrogenes
retro_mluc_1915, retro_mluc_484,
Monodelphis domestica ENSMODG00000028949 ortholog_one2many 1 retrogene
retro_mdom_1909,
Mustela putorius furo ENSMPUG00000000885 ortholog_one2many 1 retrogene
retro_mputfur_617,
Mus musculus ENSMUSG00000078427 ortholog_many2many 1 retrogene
retro_mmus_54,
Nomascus leucogenys ENSNLEG00000017599 ortholog_one2many 2 retrogenes
retro_nleu_2779, retro_nleu_569,
Otolemur garnettii ENSOGAG00000001693 ortholog_one2many 3 retrogenes
retro_ogar_1630, retro_ogar_2272, retro_ogar_2333,
Procavia capensis ENSPCAG00000009477 ortholog_one2many 2 retrogenes
retro_pcap_262, retro_pcap_45,
Pongo abelii ENSPPYG00000004630 ortholog_one2many 2 retrogenes
retro_pabe_3116, retro_pabe_3358,
Pan troglodytes ENSPTRG00000029747 ortholog_one2many 2 retrogenes
retro_ptro_2644, retro_ptro_2782,
Rattus norvegicus ENSRNOG00000030520 ortholog_one2many 2 retrogenes
retro_rnor_1326, retro_rnor_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_202 100.00 80.00
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Download FASTA sequences of all ENSBTAG00000020662 retrocopies