Parental gene:

ENSCPOG00000011755

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:42356843..42399593(+)


>ENSCPOG00000011755
AGATATGAGGTAATAAATAGACATACAAATAAACTTGCTGAACTAAAGCAAGAATGTCTTGCACGTGGTTTAGAGACCAA
AGGAATAAAACAAGATCTCATCAACAGGCTCCAGGCATATCTTGAAGAACATGCCGAAGAGGAGGCAAATGAAGAAGATG
TACTGGGAGATGAAACAGAGGAAGAAGAACCAAAGCCTATAGAACTGCCTGTCAAAGAGGAAGAACCCCCTGAAAAAACT
GTTGATGTGGCAGCAGAGAAGAAAGTGGTAAAAATTACATCTGAGATGCCACAGACTGAGAGAATGCAGAAGAGGGCTGA
ACGATTCAATGTACCTGTGAGTTTGGAAAGCAAGAAAGCTGCTCGGGCAGCTAGGTTTGGAATTTCTTCAGTTCCAACAA
AAGGTCTGTCATCTGACACCAAACCTATGGTTAACCTGGATAAGCTAAAAGAAAGAGCACAAAGATTTGGTTTGAATGTC
TCTTCAATCTCTAGAAAGTCTGAAGATGATGAAAAGCTGAAAAAGAGGAAGGAACGATTTGGGATTGTCACAAGTTCAGC
TGGAATTGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGAATTGCGTGA

Library Parental gene expression (RPM)
SRP017611_brain 21 .11 RPM
SRP017611_kidney 30 .78 RPM
SRP017611_liver 21 .81 RPM
SRP040447_lung 23 .13 RPM
SRP040447_skeletal_muscle 23 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011769 ortholog_one2many 2 retrogenes
retro_amel_1602, retro_amel_347,
Bos taurus ENSBTAG00000020662 ortholog_many2many 1 retrogene
retro_btau_202,
Choloepus hoffmanni ENSCHOG00000005081 ortholog_one2many 5 retrogenes
retro_chof_1001, retro_chof_1749, retro_chof_410, retro_chof_705, retro_chof_93,
Callithrix jacchus ENSCJAG00000007853 possible_ortholog 8 retrogenes
retro_cjac_1070, retro_cjac_1487, retro_cjac_1801, retro_cjac_2439, retro_cjac_2560, retro_cjac_389, retro_cjac_4139, retro_cjac_731,
Dipodomys ordii ENSDORG00000001065 possible_ortholog 1 retrogene
retro_dord_80,
Erinaceus europaeus ENSEEUG00000015176 ortholog_one2many 1 retrogene
retro_eeur_549,
Homo sapiens ENSG00000205323 possible_ortholog 1 retrogene
retro_hsap_3882,
Gorilla gorilla ENSGGOG00000013217 possible_ortholog 2 retrogenes
retro_ggor_2613, retro_ggor_2753,
Loxodonta africana ENSLAFG00000015053 ortholog_one2many 1 retrogene
retro_lafr_1024,
Microcebus murinus ENSMICG00000010902 possible_ortholog 1 retrogene
retro_mmur_358,
Myotis lucifugus ENSMLUG00000003565 ortholog_one2many 2 retrogenes
retro_mluc_1915, retro_mluc_484,
Monodelphis domestica ENSMODG00000028949 ortholog_one2many 1 retrogene
retro_mdom_1909,
Mustela putorius furo ENSMPUG00000000885 ortholog_one2many 1 retrogene
retro_mputfur_617,
Mus musculus ENSMUSG00000078427 possible_ortholog 1 retrogene
retro_mmus_54,
Nomascus leucogenys ENSNLEG00000017599 possible_ortholog 2 retrogenes
retro_nleu_2779, retro_nleu_569,
Otolemur garnettii ENSOGAG00000001693 ortholog_one2many 3 retrogenes
retro_ogar_1630, retro_ogar_2272, retro_ogar_2333,
Procavia capensis ENSPCAG00000009477 ortholog_one2many 2 retrogenes
retro_pcap_262, retro_pcap_45,
Pongo abelii ENSPPYG00000004630 possible_ortholog 2 retrogenes
retro_pabe_3116, retro_pabe_3358,
Pan troglodytes ENSPTRG00000029747 possible_ortholog 2 retrogenes
retro_ptro_2644, retro_ptro_2782,
Rattus norvegicus ENSRNOG00000030520 possible_ortholog 2 retrogenes
retro_rnor_1326, retro_rnor_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1313 58.27 59.33
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Download FASTA sequences of all ENSCPOG00000011755 retrocopies