RetrogeneDB ID: | retro_ggor_2753 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:100702391..100702896(-) | ||
Located in intron of: | ENSGGOG00000004401 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SARNP | ||
Ensembl ID: | ENSGGOG00000013217 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.95 % |
Parental protein coverage: | 80.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LEEHAEEEANEEDVLGDETEEEETKP-IELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERF |
L..HAEE....EDVLG.ETEEEETKP..E..VKEEE.PEKTVDV.AEKKVVKITSEIPQ.ERMQKRAE.. | |
Retrocopy | LSGHAEEA--NEDVLGAETEEEETKP>VEISVKEEELPEKTVDVEAEKKVVKITSEIPQGERMQKRAEKV |
Parental | NVPVSLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER |
.VPVSL.SKK.ARAARFG.SSV.TKGLSS.NKP..NLDKLKERAQRFGLN.SSISRKSEDDEKLK.RK.. | |
Retrocopy | HVPVSL*SKKTARAARFGTSSVSTKGLSSNNKPIMNLDKLKERAQRFGLNGSSISRKSEDDEKLKRRKD* |
Parental | FGIVTSSAGT-GTTEDTEAKKRKRAERFGIA |
FGI.T.SAGT...TEDTEAK.RKRA.R.GIA | |
Retrocopy | FGIITGSAGTRRNTEDTEAKNRKRAARYGIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 23 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 23 .17 RPM |
SRP007412_heart | 0 .00 RPM | 16 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 42 .24 RPM |
SRP007412_liver | 0 .00 RPM | 20 .50 RPM |
SRP007412_testis | 0 .00 RPM | 71 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011769 | 2 retrocopies | |
Bos taurus | ENSBTAG00000020662 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007853 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000011755 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001065 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015176 | 1 retrocopy | |
Homo sapiens | ENSG00000205323 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013217 | 2 retrocopies |
retro_ggor_2613, retro_ggor_2753 ,
|
Loxodonta africana | ENSLAFG00000015053 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010902 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000028949 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000885 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078427 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017599 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000009477 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004630 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000029747 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000030520 | 2 retrocopies |