Parental gene: | SARNP, ENSCJAG00000007853 |
| Aliases: | None |
| Description: | SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:24432] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:44551689..44622437(-) |
>ENSCJAG00000007853
ATGGCGACCGAGACGGTGGAGCTCCATAAGCTGAAGCTTGCTGAACTAAAGCAAGAATGTCTTGCTCGTGGTTTGGAGAC
CAAGGGAATAAAGCAAGATCTTATCCATAGACTCCAGGCATATCTTGAAGAACATGCTGAAGAGGAGGCAAATGAAGAAG
ATGTACTGGGAGATGAAACAGAGGAAGAAGAAACAAAGCCTATAGAGCTCCCTGTCAAAGAGGAAGAACCCCCTGAAAAA
ACTGTTGATGTGGCAGCAGAGAAGAAAGTGGTGAAAATTACATCTGAAATACCACAGACTGAGAGAATGCAGAAGAGGGC
CGAACGATTCAATGTACCTGTGAGCTTGGAGAGTAAGAAAGCTGCTCGGGCAGCTAGGTTTGGGATTTCTTCAGTTCCAA
CAAAAGGTCTGCCGTCTGATAACAAACCTATGGTTAGCTTGGATAAGCTGAAGGAAAGAGCTCAAAGATTTGGTTTGAAT
GTCTCTTCAATCTCCAGAAAGTCTGAAGATGATGAGAAACTGAAAAAGAGGAAGGAACGATTTGGGATTGTCACAAGTTC
AGCTGGAAGTGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 14 .29 RPM |
| SRP051959_heart | 16 .98 RPM |
| SRP051959_kidney | 18 .99 RPM |
| SRP051959_liver | 12 .97 RPM |
| SRP051959_lung | 19 .13 RPM |
| SRP051959_lymph_node | 21 .78 RPM |
| SRP051959_skeletal_muscle | 17 .54 RPM |
| SRP051959_spleen | 21 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011769 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000020662 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000011755 | possible_ortholog | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000001065 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015176 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000205323 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013217 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000015053 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000010902 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000028949 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000885 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000078427 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017599 | ortholog_one2one | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000009477 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004630 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000029747 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000030520 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_389 | 64.67 | 84.29 | Please wait, loading  |
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| 2. | retro_cjac_731 | 77.83 | 98.57 | Please wait, loading |
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| 3. | retro_cjac_1070 | 73.46 | 100.00 | Please wait, loading |
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| 4. | retro_cjac_1487 | 71.93 | 74.67 | Please wait, loading |
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| 5. | retro_cjac_1801 | 81.22 | 100.00 | Please wait, loading |
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| 6. | retro_cjac_2439 | 82.48 | 64.76 | Please wait, loading |
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| 7. | retro_cjac_2560 | 85.78 | 100.00 | Please wait, loading |
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| 8. | retro_cjac_4139 | 98.57 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000007853 retrocopies