RetrogeneDB ID: | retro_pcap_262 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_23900:15213..15714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SARNP | ||
Ensembl ID: | ENSPCAG00000009477 | ||
Aliases: | None | ||
Description: | SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:24432] |
Percent Identity: | 60.95 % |
Parental protein coverage: | 78.1 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EEEANEEDVLGDETEEEEAKPIELPVKEEEPPEKTVDMAAEKKVVKITSEIS-QTERMQKRAERFNVPVS |
EEE.NEE.VLGDETEEEE.KP.ELPV..EE.PE..VDMAAEKKVVKI.S....Q.E.MQKRAE.FNV.VS | |
Retrocopy | EEEENEEGVLGDETEEEESKPVELPVTVEETPEEAVDMAAEKKVVKIKSKRI>QIEKMQKRAE*FNVLVS |
Parental | LESKKAARAARSMFSSVPTKGLSSDTKPMINLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVT |
.ESKK.A.A.R...SSV..KGLSS.T...INLD..K.RAQRFGLNV...SRKSEDDEK............ | |
Retrocopy | MESKKRAQATRLGISSVTAKGLSSETISVINLDEWKKRAQRFGLNVF*VSRKSEDDEKPXXXXKERDLGL |
Parental | SSV-GTGTTEDTEXXXXK---RAERFGIA |
S.....GT...TE....K...RAE.FGI. | |
Retrocopy | SQI<SAGTGTTTENTGAKKRKRAEHFGIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |