RetrogeneDB ID: | retro_eeur_549 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_342544:40398..40755(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SARNP | ||
Ensembl ID: | ENSEEUG00000015176 | ||
Aliases: | None | ||
Description: | SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:24432] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 55.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEANEEDVLGDETEEEEPKPMELPVKEEEP--SEKPVDMTAEKKVVKITSEMPQTERMQKTAERFNVPV |
EEEANEE.VLGDETE.EEPKP..LPV.EEE...SEK.V.MTAEKKV.K.TSEM.Q.ERMQK.AERFNVPV | |
Retrocopy | EEEANEEVVLGDETEDEEPKPVDLPVQEEEEESSEKTVNMTAEKKVIKLTSEMSQAERMQKRAERFNVPV |
Parental | SLESRKAARAARFGISSVSSKGLSPDTKPMVNLDKLKERAQRFGLNVSS |
SLES.KAARAARFGISSVS.KGLS.DTKPM.NLDKL..RAQRFGLNVSS | |
Retrocopy | SLESKKAARAARFGISSVSKKGLSHDTKPMANLDKLRQRAQRFGLNVSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .97 RPM | 16 .76 RPM |
SRP017611_kidney | 1 .50 RPM | 19 .50 RPM |
SRP017611_liver | 0 .48 RPM | 4 .02 RPM |