Parental gene:

HNRNPH1, ENSCAFG00000000336

Aliases:HNRNPH1, HNRPH1
Description:heterogeneous nuclear ribonucleoprotein H1 (H) [Source:HGNC Symbol;Acc:5041]
Organism:Dog (Canis familiaris)
Coordinates:11:2051370..2060154(+)


>ENSCAFG00000000336
ATGATGTTGGGCACCGAAGGCGGAGAGGGGTTCGTGGTGAAGGTCCGGGGCTTGCCCTGGTCTTGCTCGGCGGATGAAGT
GCAGCGTTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATCGAAATCTTTAAGAGCAG
TCGAGCTGAAGTTAGAACTCACTATGATCCACCACGAAAGCTTATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTG
GAGCTGGCAGAGGGTATAACAGCATTGGCAGGGGAGCTGGCTTTGAACGGATGAGGCGTGGTGCTTATGGTGGAGGTTAT
GGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGGGTCCGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCACAGATATGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACATTGTGTACACATGC
GGGGATTACCTTACAGAGCTACTGAGAATGACATTTATAATTTTTTTTCACCGCTTAACCCTGTGAGAGTACATATTGAA
ATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTCGAGTTTGCAACTCATGAAGATGCTGTGGCAGCTATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGCAAACCAGTCCAGTTATGGTGGC
CCAGCCAGTCAGCAGCTGAGTGGTGGTTATGGAGGCGGCTATGGCGGCCAGAGCAGCATGAGTGGATATGACCAAGTTTT
ACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 330 .78 RPM
SRP017611_brain 127 .90 RPM
SRP017611_kidney 135 .71 RPM
SRP017611_liver 131 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009389 ortholog_one2one 1 retrogene
retro_btau_130,
Canis familiaris ENSCAFG00000009305 other_paralog 1 retrogene
retro_cfam_1096,
Choloepus hoffmanni ENSCHOG00000003841 possible_ortholog 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Callithrix jacchus ENSCJAG00000009931 possible_ortholog 1 retrogene
retro_cjac_127,
Dipodomys ordii ENSDORG00000005453 ortholog_one2one 1 retrogene
retro_dord_3,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Gorilla gorilla ENSGGOG00000025844 ortholog_one2one 2 retrogenes
retro_ggor_1299, retro_ggor_177,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Monodelphis domestica ENSMODG00000009436 possible_ortholog 3 retrogenes
retro_mdom_1301, retro_mdom_1302, retro_mdom_333,
Mustela putorius furo ENSMPUG00000000693 ortholog_one2one 1 retrogene
retro_mputfur_156,
Mus musculus ENSMUSG00000007850 ortholog_one2one 1 retrogene
retro_mmus_142,
Nomascus leucogenys ENSNLEG00000026658 ortholog_one2one 3 retrogenes
retro_nleu_1668, retro_nleu_28, retro_nleu_48,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 possible_ortholog 1 retrogene
retro_shar_674,
Ictidomys tridecemlineatus ENSSTOG00000016376 ortholog_one2one 2 retrogenes
retro_itri_66, retro_itri_78,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_200 92.36 95.44
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2. retro_cfam_230 75.06 93.39
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Download FASTA sequences of all ENSCAFG00000000336 retrocopies