Parental gene:

HNRNPA2B1, ENSCHOG00000013832

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_8000:3839..8485(-)


>ENSCHOG00000013832
AGAGAAAAGGAACAATTCCGTAAACTCTTCATTGGTGGCCTAAGTTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTA
TGAGCAATGGGGAAAACTTACAGACTGTGTGGTGATGAGAGATCCTGCAAGTAAAAGATCAAGAGGAGGTTTTGTAACTT
TTTCTTCAATGGCTGAGGTCGATGCTGCAATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCAAAACGC
GCTGTAGCAAGAGAGGAATCTGGAAAACCGGGTGCTCATGTAACTGTGAAGAAGTTGTTTGTTGGTGGAATTAAAGAAGA
TACTGAGGAACATCACCTTAGAGATTACTTCGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGT
CTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCACGATCCTGTTGATAAAATTGTATTGCAGAAGTACCAT
ACCATCAATGGTCATAATGCTGAAGTGAGAAAGGCTTTGTCTCGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGG
AAGAGGAGGGAACTTTGGATTTGGAGATTCACGTGGTGGCGGTGGAAATTTTGGACCAGGACCAGGAAGTAACTTTAGAG
GAGGATCTGATGGATATGGAAGTGGCCGTGGATTTGGAGATGGTTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAAT
TTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGG
CTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGC
AACCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAAC
TATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGAGGGAGGAGCCGATATTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000000160 within_species_paralog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 within_species_paralog 2 retrogenes
retro_chof_1578, retro_chof_18,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000007908 ortholog_one2one 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2many 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Otolemur garnettii ENSOGAG00000015353 ortholog_one2one 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Rattus norvegicus ENSRNOG00000011175 ortholog_one2one 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_499 71.78 68.93
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2. retro_chof_853 59.68 72.78
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3. retro_chof_1060 69.79 56.21
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4. retro_chof_1191 70.56 71.60
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5. retro_chof_1413 92.37 76.92
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6. retro_chof_1460 65.82 56.51
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7. retro_chof_1507 62.44 57.69
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8. retro_chof_2062 53.16 55.03
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9. retro_chof_2135 55.36 79.59
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10. retro_chof_2235 69.32 71.60
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11. retro_chof_2263 68.28 54.44
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12. retro_chof_2404 66.67 71.60
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13. retro_chof_2425 69.06 65.09
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14. retro_chof_2473 70.00 68.64
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15. retro_chof_2574 54.01 77.51
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Download FASTA sequences of all ENSCHOG00000013832 retrocopies