Parental gene:

ENSCJAG00000011679

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:97098141..97106680(+)


>ENSCJAG00000011679
ATGGCCATGCAGAAAATCTTTGCTCGGGAAATCCTGGACTCCAGGGGCAACCCCACAGTGGAGGTGGACCTGCACACAGC
CAAGGGCCGATTCCGAGCAGCTGTGCCCAGTGGGGCTTCCACGGGTATCTATGAAGCTCTGGAACTAAGAGATGGAGACA
AAGCCCGCTATCTGGGGAAAGGAGTCCTGAAGGCTGTGGAACACATCAACAAGACTCTAGGCCCTGCTTTGCTGGAAAAG
AAACTAAGTGTTGTGGATCAAGAAAAAAAAAAAGTTGACAAATTTATGATTGAGCTGGATGGGACCGAGAATTGCCTCCT
TCCAGCCAAGTTTGGGGCCAATGCCATCCTGGGCGTGTCCTTGGCCGTGTGTAAGGCGGGAGCAGCTGAGAAGGGGGTCC
CCCTTTACCGCCACATTGCAGATCTTGCTGGGAACCCTGACCTCATACTCCCAGTGCCAGCTTTCAACGTGATCAACGGG
GGCTCCCATGCTGGAAACAAGCTGGCCATGCAGGAGTTCATGATTCTGCCTCCTGTGGGAGCCAGCTCCTTCAAGGAAGC
CATGCGCATTGGTGCTGAGGTCTACCACCACCTCAAGGGGGTCATCAAGGCCAAGTATGGGAAGGATGCCAACAATGTGG
GTGATGAAGGTGGCTTCGCACCCAACATCCTGGAGAACAATGAGGCCCTAGAGTTGCTGAAGACAGCCATCCAGGCAGCT
GGTTATCCAGACAAGGTGGTGATCGGCATGGATGTGGCAGCGTCTGAGTTCTATCGCAATGGGAAGTACGATCTTGACTT
CAAGTCACCTGATGATCCCGCACGGCACATCACTGGAGAGAAACTTGGAGAGCTGTATAAGAGCTTCATCAAGAACTACC
CTGTGGTCTCCATCGAGGACCCCTTTGACCAGGATGACTGGGCCACTTGGACCTCGTTCCTCTCGGGAGTGAACATCCAG
ATTGTGGGGGATGACCTGACAGTCACCAACCCTAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCT
GCTAAAGGTCAACCAGATTGGCTCGGTGACTGAATCGATCCAGGCGTGCAAACTTGCTCAGACTAACGGCTGGGGAGTGA
TGGTGAGCCACCGCTCTGGGGAGACTGAGGACACATTCATTGCTGACCTTGTGGTGGGACTCTGCACAGGACAGATCAAG
ACTGGCGCCCCCTGTCGCTCGGAGCGTCTGGCCAAATACAACCAACTCATGAGGATTGAGGAGGCTCTTGGGGACAAGGC
TATATTTGCTGGACGAAAGTTCCGCAACCCGAAGGCCAAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .38 RPM
SRP051959_skeletal_muscle 1746 .60 RPM
SRP051959_lymph_node 1 .00 RPM
SRP051959_lung 1 .50 RPM
SRP051959_liver 0 .37 RPM
SRP051959_kidney 0 .64 RPM
SRP051959_heart 77 .93 RPM
SRP051959_colon 0 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015802 possible_ortholog 2 retrogenes
retro_cfam_1010, retro_cfam_2134,
Callithrix jacchus ENSCJAG00000000359 within_species_paralog 4 retrogenes
retro_cjac_1963, retro_cjac_2238, retro_cjac_3891, retro_cjac_438,
Dasypus novemcinctus ENSDNOG00000011654 ortholog_one2many 2 retrogenes
retro_dnov_1712, retro_dnov_75,
Macropus eugenii ENSMEUG00000007915 ortholog_one2many 25 retrogenes
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
Rattus norvegicus ENSRNOG00000004078 ortholog_one2many 1 retrogene
retro_rnor_2228,
Tupaia belangeri ENSTBEG00000002346 ortholog_one2many 5 retrogenes
retro_tbel_1514, retro_tbel_3080, retro_tbel_3130, retro_tbel_4230, retro_tbel_4383,
Tarsius syrichta ENSTSYG00000007066 ortholog_one2many 7 retrogenes
retro_tsyr_1019, retro_tsyr_1157, retro_tsyr_1626, retro_tsyr_1917, retro_tsyr_2043, retro_tsyr_52, retro_tsyr_534,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_115 96.31 100.00
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2. retro_cjac_177 97.47 100.00
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Download FASTA sequences of all ENSCJAG00000011679 retrocopies