Parental gene:

ENSCJAG00000001478

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:73373153..73374739(+)


>ENSCJAG00000001478
GGAGTGCAGTGGTGTGATCTCAGCTCACTGGAACCTCCGCCTCCCAGGTTCCAGCAATTCTCCTGCCACAGACTCCCAAG
TAGCTGGGATTACAGGCATGTGCCACCACGCTTGGCTAAATTTTTTGTATTTTTAGTAGAAATGGGATCTCCCTTTGTGG
CCCAGGCTGGTCTCAAACTCCTGACTTCAAGGAATCCTCCCCTCTCGGCCTCTCAAAGTGCTGGGATTACATGTGTGAGC
CACTTTGCCTTGCCTCATAGAATT

Library Parental gene expression (RPM)
SRP051959_colon 0 .00 RPM
SRP051959_heart 0 .00 RPM
SRP051959_kidney 0 .00 RPM
SRP051959_liver 0 .00 RPM
SRP051959_lung 0 .00 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_spleen 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004781 within_species_paralog 25 retrogenes
retro_cjac_3350, retro_cjac_3368, retro_cjac_3371, retro_cjac_3401, retro_cjac_3403, retro_cjac_3420, retro_cjac_3462, retro_cjac_3481, retro_cjac_3489, retro_cjac_3495, retro_cjac_3504, retro_cjac_3521, retro_cjac_3536, retro_cjac_3569, retro_cjac_3578, retro_cjac_3581, retro_cjac_3589, retro_cjac_3658, retro_cjac_3678, retro_cjac_3701, retro_cjac_3744, retro_cjac_3763, retro_cjac_3771, retro_cjac_3774, retro_cjac_3805,
Callithrix jacchus ENSCJAG00000013317 within_species_paralog 22 retrogenes
retro_cjac_3373, retro_cjac_3374, retro_cjac_3404, retro_cjac_3446, retro_cjac_3488, retro_cjac_3506, retro_cjac_3532, retro_cjac_3546, retro_cjac_3550, retro_cjac_3553, retro_cjac_3607, retro_cjac_3618, retro_cjac_3620, retro_cjac_3686, retro_cjac_3693, retro_cjac_3696, retro_cjac_3704, retro_cjac_3712, retro_cjac_3720, retro_cjac_3739, retro_cjac_3782, retro_cjac_3788,
Callithrix jacchus ENSCJAG00000034074 within_species_paralog 2 retrogenes
retro_cjac_3497, retro_cjac_3790,
Callithrix jacchus ENSCJAG00000034457 within_species_paralog 2 retrogenes
retro_cjac_3365, retro_cjac_3726,
Callithrix jacchus ENSCJAG00000037640 within_species_paralog 34 retrogenes
retro_cjac_3345, retro_cjac_3347, retro_cjac_3395, retro_cjac_3397, retro_cjac_3398, retro_cjac_3410, retro_cjac_3428, retro_cjac_3436, retro_cjac_3479, retro_cjac_3496, retro_cjac_3500, retro_cjac_3501, retro_cjac_3505, retro_cjac_3523, retro_cjac_3529, retro_cjac_3537, retro_cjac_3568, retro_cjac_3587, retro_cjac_3592, retro_cjac_3600, retro_cjac_3612, retro_cjac_3638, retro_cjac_3655, retro_cjac_3660, retro_cjac_3679, retro_cjac_3698, retro_cjac_3708, retro_cjac_3724, retro_cjac_3732, retro_cjac_3746, retro_cjac_3756, retro_cjac_3776, retro_cjac_3796, retro_cjac_3802,
Callithrix jacchus ENSCJAG00000037769 within_species_paralog 2 retrogenes
retro_cjac_3356, retro_cjac_3507,
Callithrix jacchus ENSCJAG00000037996 within_species_paralog 2 retrogenes
retro_cjac_3627, retro_cjac_3669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3344 59.77 96.59
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2. retro_cjac_3354 63.64 96.59
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3. retro_cjac_3367 67.27 62.50
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4. retro_cjac_3392 53.09 92.05
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5. retro_cjac_3411 52.31 72.73
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6. retro_cjac_3414 62.79 96.59
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7. retro_cjac_3422 65.67 73.86
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8. retro_cjac_3438 57.38 68.18
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9. retro_cjac_3490 55.70 88.64
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10. retro_cjac_3544 54.76 94.32
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11. retro_cjac_3564 51.81 90.91
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12. retro_cjac_3571 55.41 81.82
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13. retro_cjac_3577 54.10 69.32
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14. retro_cjac_3588 56.36 61.36
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15. retro_cjac_3597 63.53 93.18
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16. retro_cjac_3608 54.44 97.73
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17. retro_cjac_3613 54.10 69.32
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18. retro_cjac_3617 65.12 97.73
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19. retro_cjac_3623 50.60 87.50
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20. retro_cjac_3649 53.33 96.59
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21. retro_cjac_3654 67.78 100.00
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22. retro_cjac_3663 57.50 90.91
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23. retro_cjac_3668 59.55 96.59
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24. retro_cjac_3713 57.75 77.27
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25. retro_cjac_3719 55.17 96.59
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26. retro_cjac_3731 55.17 96.59
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27. retro_cjac_3764 57.38 68.18
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28. retro_cjac_3772 55.74 68.18
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29. retro_cjac_3787 56.18 97.73
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30. retro_cjac_3795 61.76 77.27
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Download FASTA sequences of all ENSCJAG00000001478 retrocopies