Parental gene:

ENSCJAG00000013317

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:44575231..44583871(-)


>ENSCJAG00000013317
AGTTTCGCTCTTGTTACCCAGGCTGGAGTGCGATGGCGCAATCTTAGCTCACCGCAACCTCTGCCTCCTGGGTTCGGGCA
GTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCATGCCCAGCTAATTTTTTGGTGTTTGTTT
TAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTCGAACTCCTGACCTCA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .02 RPM
SRP051959_skeletal_muscle 0 .02 RPM
SRP051959_lymph_node 0 .05 RPM
SRP051959_lung 0 .05 RPM
SRP051959_liver 0 .00 RPM
SRP051959_kidney 0 .00 RPM
SRP051959_heart 0 .00 RPM
SRP051959_colon 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001478 within_species_paralog 30 retrogenes
retro_cjac_3344, retro_cjac_3354, retro_cjac_3367, retro_cjac_3392, retro_cjac_3411, retro_cjac_3414, retro_cjac_3422, retro_cjac_3438, retro_cjac_3490, retro_cjac_3544, retro_cjac_3564, retro_cjac_3571, retro_cjac_3577, retro_cjac_3588, retro_cjac_3597, retro_cjac_3608, retro_cjac_3613, retro_cjac_3617, retro_cjac_3623, retro_cjac_3649, retro_cjac_3654, retro_cjac_3663, retro_cjac_3668, retro_cjac_3713, retro_cjac_3719, retro_cjac_3731, retro_cjac_3764, retro_cjac_3772, retro_cjac_3787, retro_cjac_3795,
Callithrix jacchus ENSCJAG00000004781 within_species_paralog 25 retrogenes
retro_cjac_3350, retro_cjac_3368, retro_cjac_3371, retro_cjac_3401, retro_cjac_3403, retro_cjac_3420, retro_cjac_3462, retro_cjac_3481, retro_cjac_3489, retro_cjac_3495, retro_cjac_3504, retro_cjac_3521, retro_cjac_3536, retro_cjac_3569, retro_cjac_3578, retro_cjac_3581, retro_cjac_3589, retro_cjac_3658, retro_cjac_3678, retro_cjac_3701, retro_cjac_3744, retro_cjac_3763, retro_cjac_3771, retro_cjac_3774, retro_cjac_3805,
Callithrix jacchus ENSCJAG00000034074 within_species_paralog 2 retrogenes
retro_cjac_3497, retro_cjac_3790,
Callithrix jacchus ENSCJAG00000034457 within_species_paralog 2 retrogenes
retro_cjac_3365, retro_cjac_3726,
Callithrix jacchus ENSCJAG00000037640 within_species_paralog 34 retrogenes
retro_cjac_3345, retro_cjac_3347, retro_cjac_3395, retro_cjac_3397, retro_cjac_3398, retro_cjac_3410, retro_cjac_3428, retro_cjac_3436, retro_cjac_3479, retro_cjac_3496, retro_cjac_3500, retro_cjac_3501, retro_cjac_3505, retro_cjac_3523, retro_cjac_3529, retro_cjac_3537, retro_cjac_3568, retro_cjac_3587, retro_cjac_3592, retro_cjac_3600, retro_cjac_3612, retro_cjac_3638, retro_cjac_3655, retro_cjac_3660, retro_cjac_3679, retro_cjac_3698, retro_cjac_3708, retro_cjac_3724, retro_cjac_3732, retro_cjac_3746, retro_cjac_3756, retro_cjac_3776, retro_cjac_3796, retro_cjac_3802,
Callithrix jacchus ENSCJAG00000037769 within_species_paralog 2 retrogenes
retro_cjac_3356, retro_cjac_3507,
Callithrix jacchus ENSCJAG00000037996 within_species_paralog 2 retrogenes
retro_cjac_3627, retro_cjac_3669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3373 76.06 98.59
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2. retro_cjac_3374 64.71 92.96
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3. retro_cjac_3404 77.78 100.00
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4. retro_cjac_3446 81.94 100.00
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5. retro_cjac_3488 72.97 100.00
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6. retro_cjac_3506 76.71 100.00
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7. retro_cjac_3532 64.86 100.00
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8. retro_cjac_3546 64.29 91.55
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9. retro_cjac_3550 65.75 100.00
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10. retro_cjac_3553 74.65 98.59
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11. retro_cjac_3607 64.18 94.37
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12. retro_cjac_3618 70.31 90.14
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13. retro_cjac_3620 70.67 100.00
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14. retro_cjac_3686 71.23 100.00
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15. retro_cjac_3693 80.28 98.59
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16. retro_cjac_3696 76.39 100.00
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17. retro_cjac_3704 80.56 100.00
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18. retro_cjac_3712 73.33 100.00
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19. retro_cjac_3720 73.97 100.00
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20. retro_cjac_3739 73.33 100.00
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21. retro_cjac_3782 66.67 76.06
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22. retro_cjac_3788 72.22 100.00
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Download FASTA sequences of all ENSCJAG00000013317 retrocopies