Parental gene:

ENSCJAG00000004781

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:34053265..34063639(-)


>ENSCJAG00000004781
TCTCACTCTGTCCCCCAGGCTGGAGTGCAGTGGCGCGACCTCCAACCTCCCGCTCCCAGGTTCAAGCTATTCTCCTCCCT
CAGCCTCCCGAGTAGCTGGGATTACTGGTGCCCGCCACCACGCCCGGCTAATTTTTGTATTTTTATGGTGACGGGGTTTC
ACCATATTGGCCAGGCTGGTCTTGAACTCCTTACCTCAGGTCATCCACCCGTCTCAGCCTCCCAAAGTGCTGGGATTACA
GGCCTGAGCCACCATACCTGGCCCTGTTCTGTTTTTCTTCAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCAT
GATCTCAGCTCACTGCAACCTCTACCTCCTGGGTTCAAGCGATTTTCCTGCCTTAGCTGCTGGAATAGCTGGGATTACAG
GCATGTGCCATCATACCTGGCTAATTTTCATATTTTTAGTGGAGATGGGATTTCACCATGTTGGCCAGGTTGCCTGGTCT
CAAACTCCTAACTTCGTGATCCTCCCGCCGCGGCCTCCTGAAGTGTTGGGACTA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .04 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_lymph_node 0 .05 RPM
SRP051959_lung 0 .07 RPM
SRP051959_liver 0 .02 RPM
SRP051959_kidney 0 .00 RPM
SRP051959_heart 0 .18 RPM
SRP051959_colon 0 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001478 within_species_paralog 30 retrogenes
retro_cjac_3344, retro_cjac_3354, retro_cjac_3367, retro_cjac_3392, retro_cjac_3411, retro_cjac_3414, retro_cjac_3422, retro_cjac_3438, retro_cjac_3490, retro_cjac_3544, retro_cjac_3564, retro_cjac_3571, retro_cjac_3577, retro_cjac_3588, retro_cjac_3597, retro_cjac_3608, retro_cjac_3613, retro_cjac_3617, retro_cjac_3623, retro_cjac_3649, retro_cjac_3654, retro_cjac_3663, retro_cjac_3668, retro_cjac_3713, retro_cjac_3719, retro_cjac_3731, retro_cjac_3764, retro_cjac_3772, retro_cjac_3787, retro_cjac_3795,
Callithrix jacchus ENSCJAG00000013317 within_species_paralog 22 retrogenes
retro_cjac_3373, retro_cjac_3374, retro_cjac_3404, retro_cjac_3446, retro_cjac_3488, retro_cjac_3506, retro_cjac_3532, retro_cjac_3546, retro_cjac_3550, retro_cjac_3553, retro_cjac_3607, retro_cjac_3618, retro_cjac_3620, retro_cjac_3686, retro_cjac_3693, retro_cjac_3696, retro_cjac_3704, retro_cjac_3712, retro_cjac_3720, retro_cjac_3739, retro_cjac_3782, retro_cjac_3788,
Callithrix jacchus ENSCJAG00000034074 within_species_paralog 2 retrogenes
retro_cjac_3497, retro_cjac_3790,
Callithrix jacchus ENSCJAG00000034457 within_species_paralog 2 retrogenes
retro_cjac_3365, retro_cjac_3726,
Callithrix jacchus ENSCJAG00000037640 within_species_paralog 34 retrogenes
retro_cjac_3345, retro_cjac_3347, retro_cjac_3395, retro_cjac_3397, retro_cjac_3398, retro_cjac_3410, retro_cjac_3428, retro_cjac_3436, retro_cjac_3479, retro_cjac_3496, retro_cjac_3500, retro_cjac_3501, retro_cjac_3505, retro_cjac_3523, retro_cjac_3529, retro_cjac_3537, retro_cjac_3568, retro_cjac_3587, retro_cjac_3592, retro_cjac_3600, retro_cjac_3612, retro_cjac_3638, retro_cjac_3655, retro_cjac_3660, retro_cjac_3679, retro_cjac_3698, retro_cjac_3708, retro_cjac_3724, retro_cjac_3732, retro_cjac_3746, retro_cjac_3756, retro_cjac_3776, retro_cjac_3796, retro_cjac_3802,
Callithrix jacchus ENSCJAG00000037769 within_species_paralog 2 retrogenes
retro_cjac_3356, retro_cjac_3507,
Callithrix jacchus ENSCJAG00000037996 within_species_paralog 2 retrogenes
retro_cjac_3627, retro_cjac_3669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3350 59.76 90.34
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2. retro_cjac_3368 64.89 52.25
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3. retro_cjac_3371 56.41 83.15
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4. retro_cjac_3401 57.64 78.65
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5. retro_cjac_3403 54.44 98.31
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6. retro_cjac_3420 63.29 88.07
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7. retro_cjac_3462 63.69 88.07
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8. retro_cjac_3481 59.52 92.05
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9. retro_cjac_3489 60.00 89.77
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10. retro_cjac_3495 58.33 78.65
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11. retro_cjac_3504 55.87 98.30
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12. retro_cjac_3521 57.64 79.55
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13. retro_cjac_3536 50.87 94.89
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14. retro_cjac_3569 58.82 73.86
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15. retro_cjac_3578 64.03 76.70
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16. retro_cjac_3581 59.06 89.77
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17. retro_cjac_3589 64.89 52.84
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18. retro_cjac_3658 53.48 98.88
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19. retro_cjac_3678 60.00 56.25
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20. retro_cjac_3701 60.80 69.10
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21. retro_cjac_3744 65.96 52.25
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22. retro_cjac_3763 59.38 69.89
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23. retro_cjac_3771 61.75 99.43
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24. retro_cjac_3774 52.91 100.00
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25. retro_cjac_3805 51.26 65.73
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Download FASTA sequences of all ENSCJAG00000004781 retrocopies