Parental gene:

ENSCJAG00000037640

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:9046266..9057144(-)


>ENSCJAG00000037640
CAATGGCACGATCTCGGCTCACCGCAACCTCCGCCTTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTG
GGACTACAGGCACGCACCACCATGCCCAGCTAATTTTTGTATTTTTTTAAAGACAGGGTTTCACCATGTTGGTCAGGCTG
GTGCTGGTCTTGAACTCCTGACTTCAAGTGATCCACCTGCCTCAGTCTCCCAAAGTGTTGGGATTACAGGCATGAGCCAC
CGCACCTGG

Library Parental gene expression (RPM)
SRP051959_colon 0 .18 RPM
SRP051959_heart 0 .25 RPM
SRP051959_kidney 0 .22 RPM
SRP051959_liver 0 .13 RPM
SRP051959_lung 0 .24 RPM
SRP051959_lymph_node 0 .30 RPM
SRP051959_skeletal_muscle 0 .17 RPM
SRP051959_spleen 0 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001478 within_species_paralog 30 retrogenes
retro_cjac_3344, retro_cjac_3354, retro_cjac_3367, retro_cjac_3392, retro_cjac_3411, retro_cjac_3414, retro_cjac_3422, retro_cjac_3438, retro_cjac_3490, retro_cjac_3544, retro_cjac_3564, retro_cjac_3571, retro_cjac_3577, retro_cjac_3588, retro_cjac_3597, retro_cjac_3608, retro_cjac_3613, retro_cjac_3617, retro_cjac_3623, retro_cjac_3649, retro_cjac_3654, retro_cjac_3663, retro_cjac_3668, retro_cjac_3713, retro_cjac_3719, retro_cjac_3731, retro_cjac_3764, retro_cjac_3772, retro_cjac_3787, retro_cjac_3795,
Callithrix jacchus ENSCJAG00000004781 within_species_paralog 25 retrogenes
retro_cjac_3350, retro_cjac_3368, retro_cjac_3371, retro_cjac_3401, retro_cjac_3403, retro_cjac_3420, retro_cjac_3462, retro_cjac_3481, retro_cjac_3489, retro_cjac_3495, retro_cjac_3504, retro_cjac_3521, retro_cjac_3536, retro_cjac_3569, retro_cjac_3578, retro_cjac_3581, retro_cjac_3589, retro_cjac_3658, retro_cjac_3678, retro_cjac_3701, retro_cjac_3744, retro_cjac_3763, retro_cjac_3771, retro_cjac_3774, retro_cjac_3805,
Callithrix jacchus ENSCJAG00000013317 within_species_paralog 22 retrogenes
retro_cjac_3373, retro_cjac_3374, retro_cjac_3404, retro_cjac_3446, retro_cjac_3488, retro_cjac_3506, retro_cjac_3532, retro_cjac_3546, retro_cjac_3550, retro_cjac_3553, retro_cjac_3607, retro_cjac_3618, retro_cjac_3620, retro_cjac_3686, retro_cjac_3693, retro_cjac_3696, retro_cjac_3704, retro_cjac_3712, retro_cjac_3720, retro_cjac_3739, retro_cjac_3782, retro_cjac_3788,
Callithrix jacchus ENSCJAG00000034074 within_species_paralog 2 retrogenes
retro_cjac_3497, retro_cjac_3790,
Callithrix jacchus ENSCJAG00000034457 within_species_paralog 2 retrogenes
retro_cjac_3365, retro_cjac_3726,
Callithrix jacchus ENSCJAG00000037769 within_species_paralog 2 retrogenes
retro_cjac_3356, retro_cjac_3507,
Callithrix jacchus ENSCJAG00000037996 within_species_paralog 2 retrogenes
retro_cjac_3627, retro_cjac_3669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3345 71.25 96.39
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2. retro_cjac_3347 55.56 96.39
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3. retro_cjac_3395 60.00 92.77
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4. retro_cjac_3397 60.66 72.29
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5. retro_cjac_3398 70.97 74.70
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6. retro_cjac_3410 62.30 72.29
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7. retro_cjac_3428 59.26 96.39
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8. retro_cjac_3436 75.00 85.54
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9. retro_cjac_3479 71.25 96.39
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10. retro_cjac_3496 70.00 95.18
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11. retro_cjac_3500 62.34 85.54
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12. retro_cjac_3501 50.67 89.16
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13. retro_cjac_3505 60.94 75.90
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14. retro_cjac_3523 55.56 96.39
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15. retro_cjac_3529 66.28 97.59
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16. retro_cjac_3537 60.66 72.29
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17. retro_cjac_3568 66.67 78.31
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18. retro_cjac_3587 61.11 84.34
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19. retro_cjac_3592 69.57 81.93
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20. retro_cjac_3600 67.74 73.49
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21. retro_cjac_3612 68.97 68.67
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22. retro_cjac_3638 70.59 78.31
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23. retro_cjac_3655 60.29 80.72
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24. retro_cjac_3660 60.92 97.59
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25. retro_cjac_3679 51.43 80.72
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26. retro_cjac_3698 57.41 65.06
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27. retro_cjac_3708 72.84 95.18
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28. retro_cjac_3724 70.42 81.93
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29. retro_cjac_3732 70.00 95.18
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30. retro_cjac_3746 70.59 100.00
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31. retro_cjac_3756 62.16 86.75
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32. retro_cjac_3776 55.81 100.00
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33. retro_cjac_3796 66.67 97.59
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34. retro_cjac_3802 60.49 96.39
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Download FASTA sequences of all ENSCJAG00000037640 retrocopies