Parental gene: | SLIRP, ENSCJAG00000016946 |
| Aliases: | None |
| Description: | SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:20495] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:103103727..103113802(+) |
>ENSCJAG00000016946
ATGGCGGCTTTAACAGCGACTGGTGCTGTGGCGCTGCGTAGAAACGTCAGTCGGCCGGTTGCTTTTGTGAGAAAAATTCC
TTGGACCGCGGCGTCGAGTCAGCTGAGAGAACATTTTGCACAGTTTGGCCATATAAAAAGGTGTATTGTACCTTTTGACA
AGGAGACTGGTTTTCACAGAGGTATGGGTTGGGTTCAGTTTTCTTCAGAAGAAGAACTTCAGAATGCACTACAACAGGAA
AATCATATTATAGATGGAGTAAAGCTCCAGGTTCAAGCTCAAAGGCCAAAAATTTTGCAAATACCCGATGAAGAGAAAGA
TTTTTGA
ATGGCGGCTTTAACAGCGACTGGTGCTGTGGCGCTGCGTAGAAACGTCAGTCGGCCGGTTGCTTTTGTGAGAAAAATTCC
TTGGACCGCGGCGTCGAGTCAGCTGAGAGAACATTTTGCACAGTTTGGCCATATAAAAAGGTGTATTGTACCTTTTGACA
AGGAGACTGGTTTTCACAGAGGTATGGGTTGGGTTCAGTTTTCTTCAGAAGAAGAACTTCAGAATGCACTACAACAGGAA
AATCATATTATAGATGGAGTAAAGCTCCAGGTTCAAGCTCAAAGGCCAAAAATTTTGCAAATACCCGATGAAGAGAAAGA
TTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 9 .75 RPM |
| SRP051959_skeletal_muscle | 18 .76 RPM |
| SRP051959_lymph_node | 9 .61 RPM |
| SRP051959_lung | 10 .22 RPM |
| SRP051959_liver | 12 .50 RPM |
| SRP051959_kidney | 12 .96 RPM |
| SRP051959_heart | 16 .87 RPM |
| SRP051959_colon | 7 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003975 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000008135 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000017230 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000001500 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007721 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000010345 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000024050 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000119705 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011059 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000012080 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000029256 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021040 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006030 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000030691 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000012314 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000028167 | ortholog_one2one | 5 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013979 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000001781 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1116 | 71.30 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1307 | 62.50 | 66.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3298 | 77.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4132 | 80.28 | 64.81 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016946 retrocopies