Parental gene: | SLIRP, ENSSSCG00000028167 |
| Aliases: | None |
| Description: | SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:20495] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | GL896346.2:32594..40459(-) |
>ENSSSCG00000028167
CTAAGTATGAAAGCAAATGTCGGTCGCCCCGTTGCGTTTGTCAGGAAGATTCCCTGGACTGCGGCCTCGAATGAGCTGAG
AGAACATTTTGCACAATTTGGCCATATACGAAAGTGCATCGTACCTTTTGACAAAGAGACTGGCTTCCACAGAGGTATGG
GCTGGATTCAATTTTCTTCAGAAGAAGAACTTCACAATGTACTCCAACAGGAAAATCATGTTATTGATGGAGTAAAGCTC
CATGTTCAAGCTCAGAAACGCAAAGCTTTACAAGGCGATCAAACTTCTGATGAAGAGAAAGATTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 13 .80 RPM |
| SRP014902_testis | 13 .15 RPM |
| SRP018288_heart | 19 .30 RPM |
| SRP018288_kidney | 12 .51 RPM |
| SRP018288_liver | 9 .59 RPM |
| SRP018288_lung | 2 .95 RPM |
| SRP018856_adipose | 33 .43 RPM |
| SRP035408_brain | 2 .25 RPM |
| SRP035408_liver | 2 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003975 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000008135 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000017230 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016946 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000001500 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007721 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000010345 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000024050 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000119705 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011059 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000012080 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000029256 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021040 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006030 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000030691 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000012314 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013979 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000001781 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_344 | 65.31 | 95.10 | Please wait, loading  |
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| 2. | retro_sscr_345 | 68.54 | 86.27 | Please wait, loading |
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| 3. | retro_sscr_383 | 68.89 | 88.24 | Please wait, loading |
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| 4. | retro_sscr_384 | 68.89 | 88.24 | Please wait, loading |
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| 5. | retro_sscr_820 | 68.37 | 95.10 | Please wait, loading |
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Download FASTA sequences of all ENSSSCG00000028167 retrocopies