Parental gene:

ENSCPOG00000008715

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:43285207..43288908(+)


>ENSCPOG00000008715
ATCTACAAAAGGAAAAGTGATGGGATCTACATCATAAATCTGAAGCGAACCTGGGAGAAGCTTCTGCTGGCAGCTCGAGC
CATAGTGGCCATTGAAAATCCTGCCGACGTCAGCGTCATATCCTCTAGGAACACTGGCCAGCGGGCTGTGCTGAAGTTTG
CCGCTGCCACTGGAGCAACTCCTATTGCTGGCCGCTTCACTCCTGGGACCTTCACTAACCAGATCCAAGCAGCTTTCCGA
GAGCCGCGTCTTCTGGTGGTTACTGATCCCAGGGCAGACCACCAGCCCCTCACAGAGGCATCTTACGTCAATCTGCCTAC
CATTGCTCTGTGTAACACAGATTCTCCACTGCGTTATGTGGACATTGCCATCCCGTGCAACAATAAGGGAGCTCACTCAG
TGGGTCTGATGTGGTGGATGCTAGCCCGGGAAGTGCTTCGCATGCGTGGCACCATCTCCCGTGAACACCCATGGGAGGTC
ATGCCTGATCTCTACTTCTACAGGGACCCTGAAGAGATTGAAAAGGAAGAACAGGCTGCTGCTGAAAAGGCAGTGACCAA
GGAAGAATTTCAGGGCGAATGGACTGCACCAGCTCCTGAGTTCACTGCTGCTCAGCCTGAGGTTGCAGACTGGTCTGAAG
GCGTGCAGGTGCCCTCGGTGCCCATCCAGCAGTTCCCTACTGAAGACTGGAGTGCTCAGCCGGCCACAGAAGACTGGTCT
GCAGCCCCCACTGCGCAGGCCACTGAATGGGTAGGAACCACCACTGAGTGGTCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 153 .40 RPM
SRP017611_kidney 255 .02 RPM
SRP017611_liver 147 .03 RPM
SRP040447_lung 373 .70 RPM
SRP040447_skeletal_muscle 424 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 possible_ortholog 27 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
Erinaceus europaeus ENSEEUG00000005292 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 possible_ortholog 22 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 possible_ortholog 32 retrogenes
Monodelphis domestica ENSMODG00000010967 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000004505 possible_ortholog 16 retrogenes
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 possible_ortholog 2 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_594 61.21 62.02
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2. retro_cpor_624 69.92 50.78
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3. retro_cpor_806 71.98 78.68
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4. retro_cpor_958 71.22 52.71
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5. retro_cpor_1206 63.69 58.91
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6. retro_cpor_1255 71.83 55.04
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7. retro_cpor_1293 68.06 55.04
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Download FASTA sequences of all ENSCPOG00000008715 retrocopies