Parental gene:

ENSFCAG00000002739

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:C2:150338570..150343135(-)


>ENSFCAG00000002739
ATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGATGTCCTCAAATTTCTTGCCGCAGGAACCCACTTAGGTGG
CACCAACCTTGACTTCCAGATGGAACAGTACATCTACAAAAGGAAAAGTGATGGTATCTACATCATCAATCTGAAGAGAA
CCTGGGAGAAGCTTCTGCTGGCAGCTCGGGCCATCGTTGCCATTGAAAACCCAGCTGATGTCAGTGTCATATCATCCCGG
AATACTGGCCAGCGAGCTGTGCTGAAGTTTGCTGCTGCGACCGGAGCCACTCCTATTGCTGGCCGCTTCACTCCCGGAAC
CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCCAGACTTCTGGTGGTCACCGATCCCAGGGCTGACCACCAGCCTC
TCACCGAGGCGTCTTACGTTAACCTGCCTACCATCGCTCTGTGTAACACAGACTCTCCTCTGCGCTATGTGGACATCGCC
ATCCCTTGCAACAACAAGGGAGCTCACTCGGTGGGTCTGATGTGGTGGATGCTGGCCCGGGAAGTTCTGCGCATGCGTGG
CACCATCTCCCGTGAACACCCCTGGGAGGTCATGCCTGACCTCTACTTCTATAGGGATCCTGAAGAGATTGAAAAGGAAG
AGCAGGCTGCTGCCGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCACTGCT
ACGCAGCCTGAGGTCGCAGACTGGTCCGAAGGCGTGCAGGTGCCCTCCGTGCCTATCCAGCAGTTCCCCACTGAGGACTG
GAGCGCTCAGCCCGCCACGGAAGACTGGTCTGCAGCCCCCACTGCTCAGGCCACCGAATGGGTGGGAACCACCACCGAGT
GGTCTTGA

Library Parental gene expression (RPM)
SRP017611_liver 548 .11 RPM
SRP017611_kidney 489 .94 RPM
SRP017611_brain 321 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 ortholog_one2one 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 ortholog_one2one 27 retrogenes
Callithrix jacchus ENSCJAG00000009675 possible_ortholog 15 retrogenes
Cavia porcellus ENSCPOG00000008715 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 ortholog_one2one 1 retrogene
Equus caballus ENSECAG00000013062 ortholog_one2many 5 retrogenes
Erinaceus europaeus ENSEEUG00000005292 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
Gorilla gorilla ENSGGOG00000015038 possible_ortholog 11 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Microcebus murinus ENSMICG00000004518 ortholog_one2one 32 retrogenes
Macaca mulatta ENSMMUG00000007930 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000022965 possible_ortholog 19 retrogenes
Monodelphis domestica ENSMODG00000010967 ortholog_one2one 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000005626 possible_ortholog 49 retrogenes
Otolemur garnettii ENSOGAG00000028830 possible_ortholog 8 retrogenes
Ochotona princeps ENSOPRG00000004505 ortholog_one2one 16 retrogenes
Pongo abelii ENSPPYG00000013993 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sorex araneus ENSSARG00000014402 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000011266 possible_ortholog 9 retrogenes
Tarsius syrichta ENSTSYG00000004458 possible_ortholog 6 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_239 69.62 97.97
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2. retro_fcat_258 75.82 60.00
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3. retro_fcat_384 71.05 50.85
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4. retro_fcat_391 75.26 64.07
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5. retro_fcat_551 58.36 97.63
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6. retro_fcat_682 62.10 71.86
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7. retro_fcat_722 70.79 59.32
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8. retro_fcat_793 80.07 91.19
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9. retro_fcat_906 61.92 98.64
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10. retro_fcat_1119 72.35 98.31
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11. retro_fcat_1127 79.92 85.42
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12. retro_fcat_1239 64.66 89.15
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13. retro_fcat_1353 80.73 64.07
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14. retro_fcat_1595 77.26 93.56
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15. retro_fcat_1668 58.82 63.05
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16. retro_fcat_1694 70.82 78.31
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17. retro_fcat_1720 78.76 86.10
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18. retro_fcat_1758 57.32 52.20
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19. retro_fcat_1804 66.47 57.97
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20. retro_fcat_1807 67.05 57.97
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21. retro_fcat_1861 69.95 64.75
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22. retro_fcat_1970 62.66 52.88
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Download FASTA sequences of all ENSFCAG00000002739 retrocopies