Parental gene:

Rpsa, ENSRNOG00000018645

Aliases:Rpsa, Lamr1
Description:40S ribosomal protein SA [Source:UniProtKB/Swiss-Prot;Acc:P38983]
Organism:Rat (Rattus norvegicus)
Coordinates:8:128006779..128010671(+)


>ENSRNOG00000018645
ATGTCCGGAGGCCTTGACGTCCTGCAGATGAAGGAGGAGGATGTCCTCAAATTCCTTGCTGCAGGAACCCACTTAGGTGG
CACCAACCTTGACTTTCAGATGGAGCAGTACATCTACAAAAGGAAAAGTGACGGTATCTACATCATCAACCTGAAGAGGA
CTTGGGAGAAGCTGTTGTTAGCCGCTCGAGCTATTGTTGCCATTGAGAACCCTGCTGATGTCAGCGTCATCTCCTCCAGG
AACACTGGCCAGCGAGCTGTGCTGAAGTTTGCCGCTGCCACAGGAGCCACTCCAATTGCTGGCCGCTTCACACCTGGGAC
CTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCCCCGGCTTCTAGTGGTGACTGATCCCCGGGCTGACCACCAGCCCC
TCACAGAGGCCTCTTACGTCAACCTGCCCACCATTGCTCTTTGTAACACAGATTCTCCCCTGCGCTATGTGGACATTGCC
ATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTCTCATGTGGTGGATGCTGGCCAGGGAAGTACTCCGCATGCGAGG
AACCATCTCCCGGGAGCACCCATGGGAGGTTATGCCTGATCTTTACTTCTACAGGGACCCAGAGGAGATTGAGAAGGAGG
AGCAGGCTGCCGCTGAGAAGGCTGTGACCAAGGAGGAATTCCAGGGTGAATGGACGGCACCAGCGCCTGAGTTCACTGCT
GCTCAGCCTGAGGTGGCCGACTGGTCTGAGGGTGTGCAGGTGCCCTCTGTGCCCATTCAGCAGTTCCCCACAGAAGACTG
GAGTGCACAGCCGGCCACTGAGGACTGGTCAGCAGCTCCCACAGCACAGGCTACTGAGTGGGTTGGAGCCACCACTGAGT
GGTCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 199 .02 RPM
SRP017611_kidney 343 .33 RPM
SRP017611_brain 170 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
Bos taurus ENSBTAG00000009757 ortholog_one2one 19 retrogenes
Canis familiaris ENSCAFG00000005101 possible_ortholog 27 retrogenes
Callithrix jacchus ENSCJAG00000009675 possible_ortholog 15 retrogenes
Cavia porcellus ENSCPOG00000008715 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 ortholog_one2many 27 retrogenes
Dipodomys ordii ENSDORG00000008267 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
Erinaceus europaeus ENSEEUG00000005292 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000018160 ortholog_one2one 4 retrogenes
Felis catus ENSFCAG00000002739 possible_ortholog 22 retrogenes
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
Gorilla gorilla ENSGGOG00000015038 possible_ortholog 11 retrogenes
Loxodonta africana ENSLAFG00000032009 ortholog_one2one 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 possible_ortholog 32 retrogenes
Macaca mulatta ENSMMUG00000007930 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000022965 possible_ortholog 19 retrogenes
Monodelphis domestica ENSMODG00000010967 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 ortholog_one2many 1 retrogene
Nomascus leucogenys ENSNLEG00000005626 possible_ortholog 49 retrogenes
Otolemur garnettii ENSOGAG00000028830 possible_ortholog 8 retrogenes
Ochotona princeps ENSOPRG00000004505 possible_ortholog 16 retrogenes
Pongo abelii ENSPPYG00000013993 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000007794 ortholog_one2one 19 retrogenes
Sorex araneus ENSSARG00000014402 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 possible_ortholog 2 retrogenes
Sus scrofa ENSSSCG00000011266 possible_ortholog 9 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tarsius syrichta ENSTSYG00000004458 possible_ortholog 6 retrogenes
Tursiops truncatus ENSTTRG00000014496 ortholog_one2one 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_645 66.81 74.58
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2. retro_rnor_702 61.63 56.95
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3. retro_rnor_1004 94.61 100.00
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4. retro_rnor_1114 63.87 51.53
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5. retro_rnor_1119 72.73 51.86
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6. retro_rnor_1213 85.71 98.64
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7. retro_rnor_1301 94.61 100.00
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8. retro_rnor_1396 69.19 66.44
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9. retro_rnor_1481 55.26 75.25
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10. retro_rnor_1634 60.80 100.00
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11. retro_rnor_1778 53.49 57.29
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12. retro_rnor_1840 86.45 52.20
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13. retro_rnor_1886 79.75 78.64
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14. retro_rnor_2068 76.31 84.41
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15. retro_rnor_2153 73.08 60.34
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16. retro_rnor_2329 82.77 100.00
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17. retro_rnor_2384 85.66 95.93
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18. retro_rnor_2444 62.64 58.31
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19. retro_rnor_2553 85.76 100.00
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20. retro_rnor_2554 86.26 61.02
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21. retro_rnor_2589 80.36 75.25
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22. retro_rnor_2637 55.23 80.00
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23. retro_rnor_2649 75.92 64.07
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24. retro_rnor_2701 85.12 97.63
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25. retro_rnor_2810 78.66 55.59
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26. retro_rnor_2912 75.89 94.24
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27. retro_rnor_2958 78.76 75.59
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Download FASTA sequences of all ENSRNOG00000018645 retrocopies