Parental gene:

ENSTBEG00000015946

Aliases:None
Description:None
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2979:55597..90711(+)


>ENSTBEG00000015946
ATGTCCGGCGCCCTTGATGTCCTGCAGATGAAGGAGGAGGATGTCCTCAAGTTCCTTGCCGCAGGAACCCACTTAGGTGG
CACCAACCTTGACTTCCAAATGGAGCAGTACATCTACAAGAGGAAAAGTGATGGCATCTACATCATAAACCTGAAGAGGA
CCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCCATTGTTGCCATAGAAAACCCTGCTGACGTCAGTGTCATATCTTCCAGG
AACACTGGACANAGGGCTGTGCTGAAGTTCGCTGCTGCCACTGGAGCTACTCCTATTGCTGGTCGCTTCACTCCTGGAAC
CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCGCGTCTTCTGGTGGTGACTGATCCCAGGGCCGACCACCAGCCTC
TCACAGAGGCGTCTTACGTCAACCTACCTACCATTGCCCTGTGCAACACGGATTCTCCTCTGCGCTATGTGGACATTGCC
ATCCCATGCAACAACAAGGTAGCTGGCTCTCTGGGGTTGACGTGGTGGATGCTGGCCAGGGAAGTGCTGCGCATGCGTGG
CACCATCTCCCGTGAACACCCGTGGGAGGTCATGCCTGACCTGTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAGG
AACAGGCTGCAGCTGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGGCTGCTCCAGCTCCTGAGTTTACTGCC
ACTCAGCCTGAGGTCGCAGACTGGTCAGAAGGCAGGCAGGTGCCGTCTGTGCCCATCCAGCAGTTCCCTACTGGAGACTG
GAGTGCTCAGCCTGCCACTGAAGACTGGTCTGCAGCCCCCACTGCTCAGGCCACTGAATGGGCGGGAACAACCACCGAGT
GGTCTTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
retro_acar_140,
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
retro_amel_1091, retro_amel_1276, retro_amel_1357, retro_amel_1432, retro_amel_1446, retro_amel_1497, retro_amel_1634, retro_amel_1817, retro_amel_1857, retro_amel_196, retro_amel_430, retro_amel_808, retro_amel_943,
Callithrix jacchus ENSCJAG00000009675 possible_ortholog 15 retrogenes
retro_cjac_1113, retro_cjac_1572, retro_cjac_1595, retro_cjac_2265, retro_cjac_2438, retro_cjac_2500, retro_cjac_2502, retro_cjac_2750, retro_cjac_2897, retro_cjac_305, retro_cjac_3160, retro_cjac_4124, retro_cjac_53, retro_cjac_732, retro_cjac_958,
Cavia porcellus ENSCPOG00000008715 possible_ortholog 7 retrogenes
retro_cpor_1206, retro_cpor_1255, retro_cpor_1293, retro_cpor_594, retro_cpor_624, retro_cpor_806, retro_cpor_958,
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
retro_dnov_1022, retro_dnov_108, retro_dnov_1099, retro_dnov_1219, retro_dnov_1372, retro_dnov_1431, retro_dnov_1614, retro_dnov_184, retro_dnov_1913, retro_dnov_1974, retro_dnov_1987, retro_dnov_1988, retro_dnov_2067, retro_dnov_2200, retro_dnov_2224, retro_dnov_2309, retro_dnov_2339, retro_dnov_2469, retro_dnov_2480, retro_dnov_375, retro_dnov_42, retro_dnov_456, retro_dnov_465, retro_dnov_663, retro_dnov_800, retro_dnov_895, retro_dnov_940,
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
retro_ecab_193, retro_ecab_453, retro_ecab_46, retro_ecab_592, retro_ecab_71,
Erinaceus europaeus ENSEEUG00000005292 possible_ortholog 2 retrogenes
retro_eeur_202, retro_eeur_679,
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
retro_etel_1399, retro_etel_1665, retro_etel_1960, retro_etel_92,
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
retro_hsap_107, retro_hsap_3015,
Gorilla gorilla ENSGGOG00000015038 possible_ortholog 11 retrogenes
retro_ggor_1069, retro_ggor_1095, retro_ggor_1110, retro_ggor_1277, retro_ggor_1729, retro_ggor_2325, retro_ggor_2461, retro_ggor_2671, retro_ggor_2804, retro_ggor_2811, retro_ggor_62,
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
retro_lafr_1234, retro_lafr_367, retro_lafr_806, retro_lafr_863, retro_lafr_997,
Macropus eugenii ENSMEUG00000008169 ortholog_one2one 14 retrogenes
retro_meug_1123, retro_meug_1137, retro_meug_1643, retro_meug_1722, retro_meug_1923, retro_meug_1933, retro_meug_1936, retro_meug_343, retro_meug_429, retro_meug_684, retro_meug_810, retro_meug_847, retro_meug_957, retro_meug_990,
Macaca mulatta ENSMMUG00000007930 possible_ortholog 2 retrogenes
retro_mmul_1789, retro_mmul_592,
Macaca mulatta ENSMMUG00000022965 possible_ortholog 19 retrogenes
retro_mmul_1008, retro_mmul_1167, retro_mmul_120, retro_mmul_1237, retro_mmul_136, retro_mmul_1527, retro_mmul_1678, retro_mmul_1755, retro_mmul_1879, retro_mmul_1909, retro_mmul_2274, retro_mmul_2388, retro_mmul_2538, retro_mmul_2541, retro_mmul_2622, retro_mmul_378, retro_mmul_789, retro_mmul_876, retro_mmul_911,
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
retro_mputfur_1045, retro_mputfur_1143, retro_mputfur_1194, retro_mputfur_1227, retro_mputfur_1311, retro_mputfur_1318, retro_mputfur_1427, retro_mputfur_1502, retro_mputfur_1558, retro_mputfur_1584, retro_mputfur_288, retro_mputfur_358, retro_mputfur_423, retro_mputfur_477, retro_mputfur_515, retro_mputfur_560, retro_mputfur_576, retro_mputfur_712, retro_mputfur_733, retro_mputfur_932, retro_mputfur_953,
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
retro_mmus_219,
Otolemur garnettii ENSOGAG00000028830 possible_ortholog 8 retrogenes
retro_ogar_1507, retro_ogar_1548, retro_ogar_2094, retro_ogar_2258, retro_ogar_3126, retro_ogar_327, retro_ogar_457, retro_ogar_567,
Pongo abelii ENSPPYG00000013993 possible_ortholog 4 retrogenes
retro_pabe_1085, retro_pabe_1142, retro_pabe_116, retro_pabe_818,
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
retro_ptro_14,
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
retro_pvam_1189, retro_pvam_1249, retro_pvam_1335, retro_pvam_1403, retro_pvam_1406, retro_pvam_1443, retro_pvam_1446, retro_pvam_396, retro_pvam_499, retro_pvam_532, retro_pvam_548, retro_pvam_60, retro_pvam_635, retro_pvam_650, retro_pvam_789, retro_pvam_889, retro_pvam_896, retro_pvam_898, retro_pvam_98,
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
retro_rnor_1004, retro_rnor_1114, retro_rnor_1119, retro_rnor_1213, retro_rnor_1301, retro_rnor_1396, retro_rnor_1481, retro_rnor_1634, retro_rnor_1778, retro_rnor_1840, retro_rnor_1886, retro_rnor_2068, retro_rnor_2153, retro_rnor_2329, retro_rnor_2384, retro_rnor_2444, retro_rnor_2553, retro_rnor_2554, retro_rnor_2589, retro_rnor_2637, retro_rnor_2649, retro_rnor_2701, retro_rnor_2810, retro_rnor_2912, retro_rnor_2958, retro_rnor_645, retro_rnor_702,
Sus scrofa ENSSSCG00000011266 possible_ortholog 9 retrogenes
retro_sscr_1022, retro_sscr_1180, retro_sscr_22, retro_sscr_269, retro_sscr_890, retro_sscr_926, retro_sscr_966, retro_sscr_967, retro_sscr_982,
Tarsius syrichta ENSTSYG00000004458 possible_ortholog 6 retrogenes
retro_tsyr_115, retro_tsyr_1290, retro_tsyr_156, retro_tsyr_38, retro_tsyr_456, retro_tsyr_807,
Vicugna pacos ENSVPAG00000012307 ortholog_one2many 4 retrogenes
retro_vpac_22, retro_vpac_293, retro_vpac_440, retro_vpac_553,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_245 71.74 77.29
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2. retro_tbel_341 71.34 54.92
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3. retro_tbel_496 87.21 100.00
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4. retro_tbel_565 77.30 94.92
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5. retro_tbel_645 82.15 100.00
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6. retro_tbel_666 71.76 57.29
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7. retro_tbel_782 77.51 56.61
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8. retro_tbel_802 86.13 58.31
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9. retro_tbel_916 87.38 71.53
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10. retro_tbel_1001 71.35 64.07
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11. retro_tbel_1007 84.77 51.19
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12. retro_tbel_1069 80.13 50.17
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13. retro_tbel_1257 60.26 50.17
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14. retro_tbel_1303 76.40 52.54
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15. retro_tbel_1319 84.41 62.37
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16. retro_tbel_1324 86.49 62.37
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17. retro_tbel_1354 82.58 60.00
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18. retro_tbel_1355 79.79 94.92
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19. retro_tbel_1382 65.61 84.75
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20. retro_tbel_1395 59.60 50.51
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21. retro_tbel_1531 80.84 87.46
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22. retro_tbel_1563 89.83 100.00
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23. retro_tbel_1616 84.88 86.78
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24. retro_tbel_1682 76.74 57.97
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25. retro_tbel_1712 90.34 80.00
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26. retro_tbel_1723 83.77 89.15
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27. retro_tbel_1935 74.39 54.92
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28. retro_tbel_2006 71.81 99.66
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29. retro_tbel_2511 77.35 60.34
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30. retro_tbel_2518 77.78 74.58
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31. retro_tbel_2544 82.46 90.51
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32. retro_tbel_2735 91.95 88.47
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33. retro_tbel_2827 78.12 64.75
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34. retro_tbel_2906 60.54 61.02
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35. retro_tbel_3198 71.71 68.14
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36. retro_tbel_3218 81.05 63.73
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37. retro_tbel_3241 77.27 95.59
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38. retro_tbel_3272 89.94 60.34
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39. retro_tbel_3325 76.01 90.17
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40. retro_tbel_3351 82.47 98.31
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41. retro_tbel_3431 87.43 56.61
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42. retro_tbel_3444 77.25 56.27
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43. retro_tbel_3555 73.02 92.88
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44. retro_tbel_3640 81.14 99.66
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45. retro_tbel_3695 89.23 100.00
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46. retro_tbel_3915 78.82 97.29
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47. retro_tbel_3975 78.72 77.63
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48. retro_tbel_4026 68.22 71.53
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49. retro_tbel_4219 91.04 71.53
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50. retro_tbel_4252 78.93 81.69
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51. retro_tbel_4259 73.91 61.69
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52. retro_tbel_4355 91.92 100.00
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53. retro_tbel_4423 72.39 54.92
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54. retro_tbel_4479 90.24 55.25
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Download FASTA sequences of all ENSTBEG00000015946 retrocopies