Parental gene:

PPDPF, ENSECAG00000009413

Aliases:None
Description:pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]
Organism:Horse (Equus caballus)
Coordinates:22:49275560..49276277(+)


>ENSECAG00000009413
ATGGCAGCCATCCCCTCCAGCTCGCTCGTGGCCACCCACGACTACTACCGGCGCCGCCTGGGTTCCACTTCCAGCAACAG
CTCCTGCGGCAGCGCCGAGTACCCTGGGGAAGCCATCCCCCACCACCCCGGTCTCCCCAAGGCCGACCCGGGTCACTGGT
GGACGAGCTTCTTTTTTGGGAAGTCCACTCTCCCATTCATGGCCACAGTGTTGGAGTCCCCAGAGCACTCGGAGTCCCCC
CAGGCCTCCAGCAGCACCATCACGTGTGACCTGGCTCCAGAAGCCTCGAGGAAGCAGCCTGGTGGCCAGCCTGCCAAAGC
CAATGCTGGGCCCCGGTCCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 14 .63 RPM
SRP021940_embryo 31 .66 RPM
SRP021940_cerebellum 15 .89 RPM
SRP021940_testis 72 .00 RPM
SRP021940_placental_villous 20 .98 RPM
SRP021940_articular_cartilage 19 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000031800 ortholog_one2many 7 retrogenes
retro_btau_1339, retro_btau_1538, retro_btau_1606, retro_btau_1817, retro_btau_1857, retro_btau_385, retro_btau_54,
Felis catus ENSFCAG00000024386 ortholog_one2many 14 retrogenes
retro_fcat_1018, retro_fcat_1061, retro_fcat_128, retro_fcat_1293, retro_fcat_1581, retro_fcat_1669, retro_fcat_1685, retro_fcat_194, retro_fcat_308, retro_fcat_325, retro_fcat_355, retro_fcat_440, retro_fcat_711, retro_fcat_789,
Homo sapiens ENSG00000125534 ortholog_one2one 1 retrogene
retro_hsap_3205,
Latimeria chalumnae ENSLACG00000002835 ortholog_one2one 1 retrogene
retro_lcha_69,
Loxodonta africana ENSLAFG00000026496 ortholog_one2many 2 retrogenes
retro_lafr_1082, retro_lafr_251,
Macaca mulatta ENSMMUG00000006064 ortholog_one2many 2 retrogenes
retro_mmul_2020, retro_mmul_41,
Monodelphis domestica ENSMODG00000016871 ortholog_one2many 2 retrogenes
retro_mdom_1325, retro_mdom_222,
Mustela putorius furo ENSMPUG00000008301 ortholog_one2one 12 retrogenes
retro_mputfur_1039, retro_mputfur_1097, retro_mputfur_1247, retro_mputfur_1282, retro_mputfur_1312, retro_mputfur_1327, retro_mputfur_1355, retro_mputfur_347, retro_mputfur_526, retro_mputfur_665, retro_mputfur_788, retro_mputfur_928,
Mus musculus ENSMUSG00000016344 ortholog_one2one 3 retrogenes
retro_mmus_1224, retro_mmus_658, retro_mmus_815,
Nomascus leucogenys ENSNLEG00000010068 ortholog_one2one 3 retrogenes
retro_nleu_1154, retro_nleu_1270, retro_nleu_1339,
Otolemur garnettii ENSOGAG00000008810 ortholog_one2one 2 retrogenes
retro_ogar_1797, retro_ogar_1912,
Pan troglodytes ENSPTRG00000013739 ortholog_one2one 1 retrogene
retro_ptro_2243,
Rattus norvegicus ENSRNOG00000012722 ortholog_one2one 1 retrogene
retro_rnor_752,
Sarcophilus harrisii ENSSHAG00000018338 ortholog_one2one 3 retrogenes
retro_shar_637, retro_shar_640, retro_shar_733,
Ictidomys tridecemlineatus ENSSTOG00000007808 ortholog_one2one 1 retrogene
retro_itri_1363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_477 96.49 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSECAG00000009413 retrocopies