Parental gene:

HSPA8, ENSECAG00000013510

Aliases:None
Description:Heat shock cognate 71 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:A2Q0Z1]
Organism:Horse (Equus caballus)
Coordinates:7:30252009..30256607(-)


>ENSECAG00000013510
ACCATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGT
GGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCGAGCTATGTCGCTTTTACTGACACGGAACGATTGATCGGTG
ATGCCGCAAAGAACCAAGTTGCAATGAACCCGACCAACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGAT
GATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAGA
ATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCGTCTATGGTTTTGACAAAGATGAAGGAAATCGCAGAAG
CCTACCTTGGGAAGACTGTTACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAA
GATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGGTTTAGA
CAAAAAGGTTGGAGCTGAGAGAAACGTACTGATCTTTGACTTAGGAGGTGGCACTTTTGATGTGTCAATCCTCACTATTG
AAGATGGAATCTTTGAGGTCAAATCTACAGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAAC
CATTTTATCGCAGAATTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGGGCCGTCCGACGCCTGCGCACTGC
TTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACT
TCTATACCTCTATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAA
GCCCTTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCCAAGAT
TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTG
CAGCTGTCCAGGCAGCCATCCTATCTGGAGACAAGTCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTT
TCCCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGCGCAACACTACGATTCCTACCAAGCAGACACA
AACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATA
ACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGAT
ATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGACAAGAGTACAGGGAAAGAAAACAAGATCACCATCACTAACGA
CAAGGGTCGTTTGAGCAAGGAAGACATAGAGCGCATGGTCCAGGAGGCTGAGAAGTACAAGGCTGAAGATGAAAAGCAGC
GGGACAAGGTGTCTTCTAAGAATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAA
GGCAAGATCAATGACGAGGACAAACAGAAGATTCTTGACAAGTGCAATGAAATCATCAACTGGCTTGACAAGAACCAGAC
TGCAGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTGGAGAAAGTTTGCAACCCCATCATTACCAAGCTGTACCAGA
GTGCAGGAGGCATGCCAGGAGGAATGCCTGGGGGTTTCCCTGGTGGTGGAGCTCCTCCATCTGGTGGTGCCTCCTCTGGA
CCCACCATTGAAGAGGTGGATTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 245 .97 RPM
SRP021940_embryo 381 .14 RPM
SRP021940_cerebellum 421 .85 RPM
SRP021940_testis 210 .82 RPM
SRP021940_placental_villous 399 .85 RPM
SRP021940_articular_cartilage 93 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004884 ortholog_one2one 2 retrogenes
retro_acar_21, retro_acar_6,
Anas platyrhynchos ENSAPLG00000010667 ortholog_one2one 1 retrogene
retro_apla_6,
Canis familiaris ENSCAFG00000011666 ortholog_one2one 3 retrogenes
retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis ENSCING00000009665 ortholog_one2many 1 retrogene
retro_cint_12,
Cavia porcellus ENSCPOG00000004169 possible_ortholog 3 retrogenes
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG00000008588 ortholog_many2many 1 retrogene
retro_csav_3,
Echinops telfairi ENSETEG00000010996 ortholog_one2one 1 retrogene
retro_etel_43,
Ficedula albicollis ENSFALG00000005812 ortholog_one2one 1 retrogene
retro_falb_18,
Gallus gallus ENSGALG00000006512 ortholog_one2one 1 retrogene
retro_ggal_8,
Loxodonta africana ENSLAFG00000030312 ortholog_one2one 4 retrogenes
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG00000001929 ortholog_one2one 1 retrogene
retro_mgal_9,
Myotis lucifugus ENSMLUG00000004834 possible_ortholog 3 retrogenes
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Monodelphis domestica ENSMODG00000012958 ortholog_one2many 2 retrogenes
retro_mdom_127, retro_mdom_99,
Mustela putorius furo ENSMPUG00000005810 ortholog_one2many 9 retrogenes
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Nomascus leucogenys ENSNLEG00000007419 ortholog_one2one 8 retrogenes
retro_nleu_119, retro_nleu_1258, retro_nleu_1261, retro_nleu_1582, retro_nleu_175, retro_nleu_1781, retro_nleu_370, retro_nleu_64,
Oreochromis niloticus ENSONIG00000004759 ortholog_one2many 1 retrogene
retro_onil_2,
Pelodiscus sinensis ENSPSIG00000012450 ortholog_one2one 2 retrogenes
retro_psin_17, retro_psin_5,
Ictidomys tridecemlineatus ENSSTOG00000003756 ortholog_one2one 1 retrogene
retro_itri_51,
Taeniopygia guttata ENSTGUG00000000491 ortholog_one2one 1 retrogene
retro_tgut_7,
Takifugu rubripes ENSTRUG00000005265 ortholog_one2one 1 retrogene
retro_trub_30,
Xiphophorus maculatus ENSXMAG00000001602 ortholog_one2many 1 retrogene
retro_xmac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_291 97.06 100.00
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2. retro_ecab_628 86.80 79.29
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Download FASTA sequences of all ENSECAG00000013510 retrocopies