Parental gene:

RPL3, ENSECAG00000020665

Aliases:None
Description:ribosomal protein L3 [Source:HGNC Symbol;Acc:10332]
Organism:Horse (Equus caballus)
Coordinates:28:36150928..36156619(-)


>ENSECAG00000020665
TCTCACAGGAAGTTCTCCGCCCCCAGGCACGGGTCCCTGGGCTTCTTGCCTCGGAAACGCAGCAGCCGGCACCGCGGCAA
GGTGAAGAGTTTCCCCAAGGATGACGCTTCGAAGCCGGTGCACCTCACGGCCTTCCTTGGCTACAAGGCCGGCATGACCC
ACATCGTGCGTGAGGTCGATAGGCCCGGATCCAAGGTGAACAAGAAGGAAGTTGTGGAGGCTGTGACCATTGTGGAGACG
CCGCCCATGGTGGTTGTGGGCATTGTGGGCTACGTGGAAACCCCTCGGGGCCTCCGTACCTTCAAGACCATCTTTGCTGA
GCACATCAGTGATGAGTGCAAAAGGCGCTTCTACAAGAACTGGCATAAGTCTAAGAAGAAGGCCTTCACCAAATACTGCA
AGAAGTGGCAGGATGAGGACGGCAGGAAGCAGCTGGAGAAGGATTTCAGCAGCATGAAGAAGTACTGCCAGGTCATCCGT
GTCATCGCCCACACCCAGATGCGCCTGCTCCCTCTGCGCCAGAAGAAGGCGCATCTCATGGAGATCCAGGTGAACGGAGG
CACGGTGGCCGAGAAACTGGACTGGGCCCGCGAGAGGCTGGAGCAGCAGGTCCCTGTGAACCAGGTGTTTGGGCAGGACG
AGATGATTGATGTCATTGGCGTGACCAAGGGCAAAGGATACAAAGGGGTCACCAGCCGCTGGCACACCAAGAAGCTGCCC
CGCAAGACCCACCGAGGGCTGCGCAAGGTTGCCTGCATTGGGGCCTGGCATCCCGCCCGAGTGGCCTTCTCCGTGGCGCG
GGCCGGGCAGAAGGGCTACCATCACCGCACGGAGATCAACAAGAAGATCTACAAGATTGGCCAGGGCTACCTCATCAAGG
ACGGCAAGCTGATCAAGAACAATGCCTCCACTGATTACGACCTGTCTGACAAGAGCATCAACCCTCTGGGTGGCTTTGTC
CACTACGGTGAAGTGACCAACGACTTTGTCATGCTGAAAGGCTGTGTGGTGGGAACCAAGAAGCGAGTGCTGACCCTTCG
CAAGTCCCTGCTGGTGCAGACGAAGCGGCGGGCCCTGGAGAAGGTTGACCTCAAGTTCATCGACACCACCTCCAAGTTTG
GCCATGGCCGCTTCCAGACTGTGGAGGAGAAGAAAGCATTCATGGGACCACTTAAGAAAGACCGAATTGCAAAGGAGGAA
GGAGCTTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 2429 .67 RPM
SRP021940_cerebellum 953 .12 RPM
SRP021940_embryo 1675 .57 RPM
SRP021940_placental_villous 868 .45 RPM
SRP021940_synovial_membrane 1754 .87 RPM
SRP021940_testis 563 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003228 ortholog_one2one 3 retrogenes
retro_btau_1644, retro_btau_281, retro_btau_341,
Canis familiaris ENSCAFG00000001346 possible_ortholog 1 retrogene
retro_cfam_97,
Callithrix jacchus ENSCJAG00000016276 possible_ortholog 6 retrogenes
retro_cjac_1198, retro_cjac_1972, retro_cjac_2157, retro_cjac_2264, retro_cjac_3079, retro_cjac_823,
Gorilla gorilla ENSGGOG00000002326 possible_ortholog 10 retrogenes
retro_ggor_1043, retro_ggor_1295, retro_ggor_1582, retro_ggor_1822, retro_ggor_2329, retro_ggor_2616, retro_ggor_2713, retro_ggor_2736, retro_ggor_2955, retro_ggor_36,
Macropus eugenii ENSMEUG00000009789 ortholog_one2one 26 retrogenes
retro_meug_1045, retro_meug_118, retro_meug_1210, retro_meug_1403, retro_meug_1452, retro_meug_1492, retro_meug_1516, retro_meug_1554, retro_meug_1589, retro_meug_1604, retro_meug_1698, retro_meug_1856, retro_meug_2150, retro_meug_2151, retro_meug_221, retro_meug_367, retro_meug_412, retro_meug_461, retro_meug_592, retro_meug_677, retro_meug_683, retro_meug_831, retro_meug_851, retro_meug_886, retro_meug_889, retro_meug_898,
Macaca mulatta ENSMMUG00000010029 possible_ortholog 4 retrogenes
retro_mmul_1170, retro_mmul_149, retro_mmul_2334, retro_mmul_973,
Monodelphis domestica ENSMODG00000009539 ortholog_one2one 2 retrogenes
retro_mdom_380, retro_mdom_408,
Nomascus leucogenys ENSNLEG00000015234 possible_ortholog 2 retrogenes
retro_nleu_1038, retro_nleu_1449,
Oryctolagus cuniculus ENSOCUG00000027712 possible_ortholog 4 retrogenes
retro_ocun_105, retro_ocun_179, retro_ocun_1893, retro_ocun_558,
Otolemur garnettii ENSOGAG00000000032 possible_ortholog 7 retrogenes
retro_ogar_1264, retro_ogar_1679, retro_ogar_2096, retro_ogar_2122, retro_ogar_2448, retro_ogar_3431, retro_ogar_960,
Pongo abelii ENSPPYG00000011837 possible_ortholog 10 retrogenes
retro_pabe_1113, retro_pabe_1861, retro_pabe_2167, retro_pabe_2743, retro_pabe_2985, retro_pabe_3170, retro_pabe_3318, retro_pabe_3349, retro_pabe_3696, retro_pabe_3761,
Rattus norvegicus ENSRNOG00000016896 possible_ortholog 2 retrogenes
retro_rnor_1333, retro_rnor_731,
Sarcophilus harrisii ENSSHAG00000003212 ortholog_one2many 2 retrogenes
retro_shar_154, retro_shar_662,
Tursiops truncatus ENSTTRG00000010880 ortholog_one2one 2 retrogenes
retro_ttru_1266, retro_ttru_1518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_897 83.46 64.43
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Download FASTA sequences of all ENSECAG00000020665 retrocopies