RetrogeneDB ID: | retro_meug_1516 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold431566:142..782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 91.63 % |
Parental protein coverage: | 53.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
SHRKFS.P.HGSLGFLP.KRSSRH.GKVKSFPKDDPSKPIHLTAFLGYKAGMTHIV.EVDRPGSKVNKKE | |
Retrocopy | SHRKFSTPSHGSLGFLPQKRSSRHWGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIV*EVDRPGSKVNKKE |
Parental | VVEAVTIVETP-PMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDE |
VVEAV.IVETP..MVIVGIVGYVQTPRGLRSFKTIFAEHISDE.KR.FYKNWHKSKKKAFTKYCKKWQDE | |
Retrocopy | VVEAVVIVETP>TMVIVGIVGYVQTPRGLRSFKTIFAEHISDEYKRQFYKNWHKSKKKAFTKYCKKWQDE |
Parental | DGKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTV |
DGKKQLEKDLSSMKKYCQVIR.IAHTQMRLLPLRQ.KSHLMEIQVNGGSVAEKLDWA.EKLEQ..P.ST. | |
Retrocopy | DGKKQLEKDLSSMKKYCQVIR-IAHTQMRLLPLRQNKSHLMEIQVNGGSVAEKLDWACEKLEQHMPMSTM |
Parental | FGQDE |
FGQD. | |
Retrocopy | FGQDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |